PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1161861g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C3H
Protein Properties Length: 421aa    MW: 45832.9 Da    PI: 8.1269
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1161861g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.2e-102854127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C ++ rtG C yG+rC+++H++
  PDK_30s1161861g004 28 PGEPDCAYYIRTGSCGYGERCRYNHPR 54
                        5789*********************96 PP
2zf-CCCH37.92.9e-1276100327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         ++ C ++++tGtCk+G++Ck++H++
  PDK_30s1161861g004  76 QPVCEYYMKTGTCKFGSTCKYHHPR 100
                         689********************96 PP
3zf-CCCH39.21.2e-12121146227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +CkF+H++
  PDK_30s1161861g004 121 GEKECSYYMKTGQCKFGLTCKFHHPQ 146
                         7899********************97 PP
4zf-CCCH38.61.8e-12277303127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f++rtG Ck+G++Ck++H++
  PDK_30s1161861g004 277 PGQPECQFYMRTGDCKFGATCKYHHPR 303
                         5789*********************96 PP
5zf-CCCH33.95.1e-11326348426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                          +C+++a+ G Ck+G++CkF H+
  PDK_30s1161861g004 326 QICSYYAQHGVCKFGPTCKFDHP 348
                         58********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-42754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2392755IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-72954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-53255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-43354IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-673100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-673100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.90674101IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-1076100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-578100IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5119146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68119147IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10121146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6121148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4125146IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422276304IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-10278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6320348IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23322350IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6322349IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8326348IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5326347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MELYRRSPAA EGAHPDPDTG LEAYPERPGE PDCAYYIRTG SCGYGERCRY NHPRDHGALA  60
GAGRTGVVEY PQHVGQPVCE YYMKTGTCKF GSTCKYHHPR QGGGSEQPVL LNYYGYPLRP  120
GEKECSYYMK TGQCKFGLTC KFHHPQPDGA SMPLPAPIFY PTVQPPSVPS PHQYPPLASW  180
QVGRPSVLPG SYMPGSYGPM LLSPGVVPVQ GWGPYPAPIS PVVSPGGQQT VQTGPLYGLS  240
DQVTTSVPAY QVPYTSASSL ARPSSSSERE QMFPERPGQP ECQFYMRTGD CKFGATCKYH  300
HPRDWSIPKT NCVLSPLGLP LRPGAQICSY YAQHGVCKFG PTCKFDHPVG TLSYSPSASS  360
LSDMPVAPYP IGFSIVNLAP SSSSSDLRPE FISSKDHRLT HQVTAATQVM VVRSLVQAEK  420
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796231.10.0zinc finger CCCH domain-containing protein 6-like isoform X1
SwissprotQ5NAW21e-174C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2H3YBG00.0A0A2H3YBG0_PHODC; zinc finger CCCH domain-containing protein 6-like isoform X1
STRINGXP_008796231.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-137C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]