PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1161861g003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 362aa    MW: 38657.4 Da    PI: 6.3658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1161861g003genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1763111355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  PDK_30s1161861g003  63 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 111
                         56******.**********965...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.61362119IPR001471AP2/ERF domain
SMARTSM003801.0E-3162125IPR001471AP2/ERF domain
CDDcd000183.69E-2862118No hitNo description
SuperFamilySSF541716.47E-2063119IPR016177DNA-binding domain
PRINTSPR003671.4E-76374IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.9E-2863118IPR001471AP2/ERF domain
PfamPF008474.3E-1165111IPR001471AP2/ERF domain
PRINTSPR003671.4E-785101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MSSSKSLDTA APKAQGHNPP SVGFCQAKPS HSPSSSSSSS PPTTASSPPE RRGRRKPAEP  60
GRFLGVRRRP WGRYAAEIRD PTTKERHWLG TFDTAQEAAL AYDRAALSMK GTQARTNFIY  120
TDTPISTFHS LLTPYHSQNF TPPPMPPPPT QPHHLIGTAS MQTTNQNIPS QSQMSHFAFQ  180
SSGDNSTSPA FGSSVETGIG NNFLFSDDSR SGYLSSIIPE SCLRSSPKHS PPGQDNIISC  240
ELNAPILSPR NQVQSHGSTS ASSSYSATNG ALFDAHSGGV GAMSSEDFPC FTEMNSGFWV  300
DEPLWELNAC EFPTSTATSM GDLGTSSMQG PACGSLPQVS DSYSPSTSSL TDVFDLGYSF  360
EH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2053118571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008796243.10.0ethylene-responsive transcription factor FZP-like
SwissprotQ6J9Q21e-47ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A2H3YBA60.0A0A2H3YBA6_PHODC; ethylene-responsive transcription factor FZP-like
STRINGXP_008796243.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105252838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.11e-47ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]