PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1160841g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 1411aa    MW: 159246 Da    PI: 7.2172
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1160841g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.1e-24114215199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   
  PDK_30s1160841g001 114 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL-- 201
                         99****************************963.3445679************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         + +++el+++++r+
  PDK_30s1160841g001 202 RGDDGELRLGIRRA 215
                         3489999****996 PP
2Auxin_resp26.23.4e-10104110675682
          Auxin_resp   56 errlsGtvvgvsdldpvrWpnSkWrsL 82  
                          ++ ++G+++g+ d+dpv+Wp+SkWr+L
  PDK_30s1160841g001 1041 TILYTGLITGIGDMDPVKWPGSKWRCL 1067
                          55679*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-42107221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-40108223IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-22112214No hitNo description
PROSITE profilePS5086313.31114216IPR003340B3 DNA binding domain
PfamPF023624.1E-22114215IPR003340B3 DNA binding domain
SMARTSM010191.8E-23114216IPR003340B3 DNA binding domain
CDDcd003035.88E-13382458No hitNo description
PfamPF082841.6E-5382459IPR013242Retroviral aspartyl protease
PROSITE profilePS5087813.283540720IPR000477Reverse transcriptase domain
SuperFamilySSF566723.67E-134542913No hitNo description
CDDcd016471.16E-83545720No hitNo description
Gene3DG3DSA:3.10.10.105.2E-20547637No hitNo description
PfamPF000785.3E-24559719IPR000477Reverse transcriptase domain
Gene3DG3DSA:3.30.70.2709.3E-8638721No hitNo description
CDDcd092741.06E-46813925No hitNo description
PfamPF065074.8E-610411067IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1411 aa     Download sequence    Send to blast
MELWHACAGP LISLPRKGSV VVYLPQGHLE HLGDAAGAAG GGLFRYDVPP HVFCTVVDVK  60
LLADAATDEV YAQLSLVAES EEVERQLQEG EAEGDVEEED VDDGLHRSSM PHMFCKTLTA  120
SDTSTHGGFS VPRRAAEDCF PPLDYKQQRP SQELIAKDLH GVEWRFRHIY RGQPRRHLLT  180
TGWSAFVNKK KLVSGDAVLF LRGDDGELRL GIRRAAQLKN RTPFSAPCSQ GLDLGTLAAV  240
ASAVSTKSVF HICYNPRNCV ICGLTLRNCC RETLGPTIWY QSLVDVEQAD NRTIGSRDGC  300
HAREVSRHGD KGTVRDYQQK FEKLANRVHG WPQNALIGTF VGGLKEEIAK EVCLIETDRE  360
DETEASTGGD LEQYGEDRTE EDSGSTHNFL SNHVAKMLQL PVDATEEFGV RVANGETLQC  420
QERFRSVDVE LQGKRFLVTF YRLLLVGLDA VLGIQWLEML GPVLCDWKLL TMKFRWDGQE  480
CEISGQPSRS EGDQQPSSTE AEKPPPDLQQ LLGEYTPLFE KPRELLPERP SSPEYPSSTI  540
NVQPYRESQS PFSSPVLLVK KKDGTLRFCT DYRMLNASTI KDRFPIPMVD DMLDELHGAR  600
YFSKLDLWAG YHQIRVHPED IPKTAYRTHH GHFKYLVMPF GLCNALSIFQ AATNSIFRRY  660
LRKFILVFFF DDILIYSSTW ELHLSHLDTT LKILAEHQFY LKPTKCLFGQ QQVEYLGHIV  720
SAKGVQVDAT KIQAMQGWSR PTNVTELRGF LGLTGYYRKF VKDYGIIAAP LTTLLRKEHF  780
QWSPLAEEAF HRLKRAMMTT LVLAMPNFLE MFVIEADASD KGIRAVLSQS GRPIAYMSKA  840
LGLTKRGWST YAKEMLAIME TVRLWRPYVL GRKFQIRTDQ KSLRHFLEQR VSTPEQQKWV  900
AKLLGYDYDI VYKPGKDNTA ADALSHQPEA ALLHAISRPL FDIWEKIRAA NQEDSYLQNK  960
IQQLDSAPER MKDYELKGGV LYYKERGSDS SEVTHVQQTD GGISQHQVVN EVDKNLVDRD  1020
QLMKELKCNL EKDKPIRIYS TILYTGLITG IGDMDPVKWP GSKWRCLLLD AHGTPYLGCQ  1080
NRERMWERGY FRNSFSRETL RKRVFKDDLH FLAEGNGYPD LGESARFHKV LQGQEFTGFR  1140
TPYDGIDVAN SQDTDVRYHQ YLDTRRSSNN ANSCILGGLG SGVRVPVGNS DLPYKCIGFS  1200
ESIGLRKVLQ GQEVVRDSPP YQGPVVDIHA RNGGFGSFDA PHTSGAGNRW PASSHGCTLL  1260
QPSQLSVLAS SPSSVLIFPQ ANFKHPCSQS VFAMNDRSKN GVLSRKETPL YHWPRHVGGE  1320
VINEHQKPGQ VHTPIHAYKP ELKNDKEISR NGCRLFGFPL TERIPLTNEV DRTERDFETD  1380
FSTSKSQIPA KPLGRSCTTV SALYALCAAP F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-77225822268Auxin response factor 1
4ldw_A2e-77225822268Auxin response factor 1
4ldw_B2e-77225822268Auxin response factor 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-103ARF family protein