 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s1158611g004 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 249aa MW: 28391.4 Da PI: 5.1287 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1158611g004 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.6 | 2.2e-18 | 32 | 86 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe ++++ +++ +LA++lgL+ rqV +WFqNrRa++k
PDK_30s1158611g004 32 EKKRRLSVYQVKALEKNFEVENKLEPDRKVRLARELGLQPRQVAIWFQNRRARWK 86
677899************************************************9 PP
|
| 2 | HD-ZIP_I/II | 127.8 | 4.4e-41 | 32 | 123 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls qvk+LE++Fe e+kLep+rKv+lareLglqprqva+WFqnrRAR+ktkqlE+dy+aLk +y+al+ + ++L++++e+L +e+
PDK_30s1158611g004 32 EKKRRLSVYQVKALEKNFEVENKLEPDRKVRLARELGLQPRQVAIWFQNRRARWKTKQLERDYAALKGSYEALRLDFHSLHRDKEALLAEM 122
69*************************************************************************************9998 PP
HD-ZIP_I/II 92 k 92
k
PDK_30s1158611g004 123 K 123
7 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009637 | Biological Process | response to blue light |
| GO:0030308 | Biological Process | negative regulation of cell growth |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 249 aa
Download sequence Send
to blast |
MYERGFQPII DGLDEEECGD GEMCSSAGSG REKKRRLSVY QVKALEKNFE VENKLEPDRK 60
VRLARELGLQ PRQVAIWFQN RRARWKTKQL ERDYAALKGS YEALRLDFHS LHRDKEALLA 120
EMKMLKDKLA EEESASFSSV KEEPLTGRSS DSDSSAVLND ENSPHDHRRM SSSTASGMFS 180
AAIGFENSTS FPCSPPSLLN SDSRQQKGFQ HQLLKTEDDE FLSGEEPCSS FFSDDHAATL 240
SWYYSEHWT
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT036856 | 2e-37 | BT036856.2 Zea mays full-length cDNA clone ZM_BFb0143M01 mRNA, complete cds. |
| GenBank | BT054500 | 2e-37 | BT054500.1 Zea mays full-length cDNA clone ZM_BFc0103D23 mRNA, complete cds. |
| GenBank | JX469932 | 2e-37 | JX469932.1 Zea mays subsp. mays clone UT3191 HB-type transcription factor mRNA, partial cds. |
| GenBank | JX514832 | 2e-37 | JX514832.1 Zea mays cultivar B73 homeodomain leucine zipper protein 10 (hdz10) mRNA, complete cds. |
