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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s1155881g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
MYB |
| Protein Properties |
Length: 317aa MW: 35029 Da PI: 5.4175 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1155881g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEd++l + + G g+W+ +ar g+ R++k+c++rw +yl
PDK_30s1155881g001 25 KGLWSPEEDDKLMSYMLRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
678*******************************************97 PP
|
| 2 | Myb_DNA-binding | 50.6 | 4.6e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++ E+el+++++ lG++ W+ Ia++++ gRt++++k++w++
PDK_30s1155881g001 78 RGAFSPKEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 121
89********************.*********.***********97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MRKLDPPAKN NPTNNNINGA SKLRKGLWSP EEDDKLMSYM LRNGQGCWSD VARNAGLQRC 60
GKSCRLRWIN YLRPDLKRGA FSPKEEELII HLHSILGNRW SQIAARLPGR TDNEIKNFWN 120
STIKKRLKNS SSPSPNDSGS PEPKVGMGGL ETLNEQEIKT MCIDSASSSS FMQGLSISNQ 180
YDLLPLPDVS CGMNNGLGTS YFHEPTSFPQ VGFGNGYYGS HGMMMEGDLV GGGGGCELFV 240
PPLESTNIEE SGTSNNTTRN ISDPHHSSNN DANKINSDNA VGSGIYWQGG NMKMEEWDFE 300
DLMKDVTSFP FLDFQAE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}. |
