PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1148161g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | BES1 | ||||||||
Protein Properties | Length: 339aa MW: 35998.6 Da PI: 8.78 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 199.8 | 8.6e-62 | 3 | 149 | 2 | 149 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspe 91 ++ r ptw+ErEnnkrRERrRRaiaakiy+GLRa+G++klpk++DnneVlkALc+eAGw+ve+DGttyr gskp + +aag sas sp+ PDK_30s1148161g002 3 SGARLPTWRERENNKRRERRRRAIAAKIYTGLRAYGDFKLPKHCDNNEVLKALCNEAGWTVEEDGTTYRTGSKPAaRVDAAAGGSASPSPC 93 57899**********************************************************************7788899********* PP DUF822 92 sslqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlslvsss 149 +s+q +sp++sy++sp sssfpspss+ +++++a +sl+p+l++ls++ss+ PDK_30s1148161g002 94 TSYQ--------PSPRASYNPSPPSSSFPSPSSSYVTHAHNAnqgadgTSLIPWLKNLSSASST 149 ****........9*******************9988888777889999**********986654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.1E-63 | 4 | 144 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MPSGARLPTW RERENNKRRE RRRRAIAAKI YTGLRAYGDF KLPKHCDNNE VLKALCNEAG 60 WTVEEDGTTY RTGSKPAARV DAAAGGSASP SPCTSYQPSP RASYNPSPPS SSFPSPSSSY 120 VTHAHNANQG ADGTSLIPWL KNLSSASSTS SLNPPSHHHF YMHAGSISAP VTPPLSSPTA 180 RSPRVKTDWD DPASQPRWAG SQYTFLPSST PPSPGRQVIP DPAWLAGLRL PSGGPSSPTY 240 TLVSSNPFGF FCKEASAGAG SSRMWTPGQS GTCSPVPGGH AGVRVSDGIS DEFAFGSSSN 300 GNLQSNGLVK PWEGERIHEE CGSDELELTL GSSRTRSEA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 3e-23 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 3e-23 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 3e-23 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 3e-23 | 6 | 76 | 372 | 442 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May function in brassinosteroid signaling. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP721490 | 1e-51 | KP721490.1 Eucalyptus grandis brassinazole-resistant 1 protein (BES3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792311.1 | 0.0 | protein BZR1 homolog 3-like | ||||
Swissprot | Q5Z9E5 | 1e-127 | BZR3_ORYSJ; Protein BZR1 homolog 3 | ||||
TrEMBL | A0A2H3Y2E9 | 0.0 | A0A2H3Y2E9_PHODC; protein BZR1 homolog 3-like | ||||
STRING | XP_008792311.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1366 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78700.1 | 2e-81 | BES1/BZR1 homolog 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|