PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1146061g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 373aa MW: 41998.6 Da PI: 8.8304

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1146061g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.9e-11	84	122	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeae 41 ++k+ rr+++NReAAr+sR+RKka++++Le +L + PDK_30s1146061g001 84 ADKVVRRLAQNREAARKSRLRKKAYVQQLESSRLKLAQL 122 7899**************************854444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-8	82	149	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.3E-8	83	131	No hit	No description
PROSITE profile	PS50217	8.956	84	128	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	6.8E-8	85	123	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-7	86	126	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.0E-30	173	248	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MISTSAHFAT SRTRRMAVYR PNHQIRMWGN SFKADSSQNT GASTIVEADT KLDNRLEDIP 60 HESLGPSKRY DQEARYDQEA NMPADKVVRR LAQNREAARK SRLRKKAYVQ QLESSRLKLA 120 QLEQELERAK QQGVYIGRHL GDATLGLAGT VNSGVAAFEI QYVHWVEEQN RQTCELKAAL 180 QANVSDIELH MLVESGMSHY DNLFRIKAIA ANSDVFYLMS GMWKTDVERF FLWIGGFRPS 240 ELLKLLASQL HPLTEQQLVA VRNLQQSSQQ AEDALSQGLD RLQQTLAETL TSDPLVASGV 300 ADYMGQMANA MGKLEALVGF ANQADNLRQQ ALQQMYKILT TRQAAQGLLA LGDYFQRLRA 360 LSSLWDARPR EPA

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MISTSAHFAT SRTRRMAVYR PNHQIRMWGN SFKADSSQNT GASTIVEADT KLDNRLEDIP  60
HESLGPSKRY DQEARYDQEA NMPADKVVRR LAQNREAARK SRLRKKAYVQ QLESSRLKLA  120
QLEQELERAK QQGVYIGRHL GDATLGLAGT VNSGVAAFEI QYVHWVEEQN RQTCELKAAL  180
QANVSDIELH MLVESGMSHY DNLFRIKAIA ANSDVFYLMS GMWKTDVERF FLWIGGFRPS  240
ELLKLLASQL HPLTEQQLVA VRNLQQSSQQ AEDALSQGLD RLQQTLAETL TSDPLVASGV  300
ADYMGQMANA MGKLEALVGF ANQADNLRQQ ALQQMYKILT TRQAAQGLLA LGDYFQRLRA  360
LSSLWDARPR EPA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008804505.1	0.0	transcription factor TGA2.2-like isoform X1
Swissprot	Q39237	1e-151	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A2H3YW29	0.0	A0A2H3YW29_PHODC; transcription factor TGA2.2-like isoform X1
STRING	XP_008804505.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-154	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]