PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1139301g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 320aa    MW: 34079 Da    PI: 5.8078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1139301g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14130176354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++++++k+L
  PDK_30s1139301g001 130 KSHSEAERRRRERINAHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 176
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.774127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11130176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-15131186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14131184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-4140179No hitNo description
Gene3DG3DSA:3.30.70.2602.1E-5213271No hitNo description
CDDcd048733.57E-8213277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESNGEGSSS RGHEFQGYRD EEQQQQHYNN NNMSNQSGGG GGGEGFVFPT EAAAAAAIGA  60
GVGGVASSSV LPWPLPPIHH LSSTQFAPSD LALARGGGVS PLSAFGGLHA ELGKLTPQEI  120
MDAKALAASK SHSEAERRRR ERINAHLAKL RSLLPSTTKT DKASLLAEVI QHVKELKRQT  180
SEIAEDSPLP TESDELTVDA SSDEDGRFIV KASLCCDDRS DLLPDLIKAL KALGLRTLKA  240
EITTLGGRVK NVLVITGEDD ADHQQQQSIA MMLQQSIASI QEALKAVMER TTASDEPSSA  300
GGIKRQRTTN LSTILEHRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008809828.11e-134transcription factor bHLH30-like
SwissprotQ9S7Y12e-80BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2H3Z8S51e-133A0A2H3Z8S5_PHODC; transcription factor bHLH30-like
STRINGXP_008809828.11e-133(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]