PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1139221g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

GRAS

Protein Properties

Length: 673aa MW: 74198.8 Da PI: 5.4653

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1139221g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	420	2e-128	282	654	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsev 87 lv+lL++cAe +ssg++e+++ +Larl elasp+g++m+R+aay++eALa r ++ +++++++ pp++ ++++ ++ ++al+l+++v PDK_30s1139221g001 282 LVSLLTSCAESISSGNHEAISFFLARLAELASPTGSSMHRVAAYYAEALALRAVKLWPHIFSITPPRALADQTggggADDDATALQLLNQV 372 689*****************************************************************9999999********** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 sPi kf hlt N+ +l+a+eg++rvHiiDfdi+qGlQWp L+q+La R+++p ++RiTg+g+ ++el+ tg rLa+fAe++++pfef PDK_30s1139221g001 373 SPITKFLHLTLNERLLRAFEGKDRVHIIDFDIKQGLQWPGLFQSLAGRANPPSHVRITGIGE----CRQELQDTGARLARFAEACNLPFEF 459 **********************************************************....********************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269 ++ v++rled++l++L+vk+++++aVn+vl+lh++l ++ + ++L l++s++P +v ++eqea+hn++++ +r++++l+yysa+fd PDK_30s1139221g001 460 HA-VVDRLEDVRLWMLHVKREDCVAVNCVLMLHKTLYNDENGGA-LMDLLGLIRSTNPAIVLMAEQEAQHNETRWEARLANSLKYYSAIFD 548 .7******************************77777766.999*************************************** PP GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgs 357 sl+ +lp++s +rik+E++ ++rei+n+vaceg+er+ rhe++e+Wr+ +e+ GF+ + ++e+++ q +l+lr+++++ ++++ ee++ PDK_30s1139221g001 549 SLDCGLPEDSLARIKIEEM-FAREIRNLVACEGSERVDRHEKFERWRKLMEDGGFRCMGIGEREMLQSRLILRMYDGENFSIDkqgEENDG 638 ***************.****************************************************999977777 PP GRAS 358 lvlgWkdrpLvsvSaW 373 l+l W +++L++vSaW PDK_30s1139221g001 639 LTLKWLNQSLYTVSAW 654 ************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.682	256	632	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-126	282	654	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MLAGCSSALL SPRHQLRSEA SVQVQGSHFQ LQERHCTSQQ RMGTQRFDLP CSFSRKDAPR 60 VAISLEKPAE ARSSSCAFRP SPATASSSSV AARALSWEGR IEIAEGGGPW ERRRSSKRRS 120 HERSSSEEDS RPDRAKRTRT GGAARLAGGE DDIWLPQSTK EHPSVEEEEE KEEEEEEEEE 180 EEKKVFLVPN AALFPFFTTT SSTLVGSFEA GRGLGTGVQP NNKSQSDSSS SSDARNSSPK 240 QHKDSSDNAA RNGPEIAHPT GFAGIAGQGG GNAQTEQQGL ELVSLLTSCA ESISSGNHEA 300 ISFFLARLAE LASPTGSSMH RVAAYYAEAL ALRAVKLWPH IFSITPPRAL ADQTGGGGAD 360 DDATALQLLN QVSPITKFLH LTLNERLLRA FEGKDRVHII DFDIKQGLQW PGLFQSLAGR 420 ANPPSHVRIT GIGECRQELQ DTGARLARFA EACNLPFEFH AVVDRLEDVR LWMLHVKRED 480 CVAVNCVLML HKTLYNDENG GALMDLLGLI RSTNPAIVLM AEQEAQHNET RWEARLANSL 540 KYYSAIFDSL DCGLPEDSLA RIKIEEMFAR EIRNLVACEG SERVDRHEKF ERWRKLMEDG 600 GFRCMGIGER EMLQSRLILR MYDGENFSID KQGEENDGLT LKWLNQSLYT VSAWAPTDIA 660 TDIAGSSATS QPS

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MLAGCSSALL SPRHQLRSEA SVQVQGSHFQ LQERHCTSQQ RMGTQRFDLP CSFSRKDAPR  60
VAISLEKPAE ARSSSCAFRP SPATASSSSV AARALSWEGR IEIAEGGGPW ERRRSSKRRS  120
HERSSSEEDS RPDRAKRTRT GGAARLAGGE DDIWLPQSTK EHPSVEEEEE KEEEEEEEEE  180
EEKKVFLVPN AALFPFFTTT SSTLVGSFEA GRGLGTGVQP NNKSQSDSSS SSDARNSSPK  240
QHKDSSDNAA RNGPEIAHPT GFAGIAGQGG GNAQTEQQGL ELVSLLTSCA ESISSGNHEA  300
ISFFLARLAE LASPTGSSMH RVAAYYAEAL ALRAVKLWPH IFSITPPRAL ADQTGGGGAD  360
DDATALQLLN QVSPITKFLH LTLNERLLRA FEGKDRVHII DFDIKQGLQW PGLFQSLAGR  420
ANPPSHVRIT GIGECRQELQ DTGARLARFA EACNLPFEFH AVVDRLEDVR LWMLHVKRED  480
CVAVNCVLML HKTLYNDENG GALMDLLGLI RSTNPAIVLM AEQEAQHNET RWEARLANSL  540
KYYSAIFDSL DCGLPEDSLA RIKIEEMFAR EIRNLVACEG SERVDRHEKF ERWRKLMEDG  600
GFRCMGIGER EMLQSRLILR MYDGENFSID KQGEENDGLT LKWLNQSLYT VSAWAPTDIA  660
TDIAGSSATS QPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-69	289	656	26	380	Protein SCARECROW
5b3h_A	1e-69	289	656	25	379	Protein SCARECROW
5b3h_D	1e-69	289	656	25	379	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	120	KRRSH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017696486.2	0.0	protein DWARF AND LOW-TILLERING-like
TrEMBL	A0A2H3ZK14	0.0	A0A2H3ZK14_PHODC; protein DWARF AND LOW-TILLERING-like
STRING	XP_008800814.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6404	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	1e-141	GRAS family protein