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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1139181g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | SBP | ||||||||
Protein Properties | Length: 398aa MW: 43831.1 Da PI: 8.0409 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133 | 1e-41 | 92 | 168 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls+++eyhrrhkvCevhsk+pvv+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+++ PDK_30s1139181g002 92 CSVDGCKADLSKCREYHRRHKVCEVHSKTPVVMVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPKP 168 **************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-34 | 84 | 153 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.214 | 89 | 166 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-39 | 91 | 170 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.5E-31 | 92 | 165 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MEWDLKMPPW DLAELERGTE PSIGSAVGSS SDPRWQASGL DCSIDLKLGG LGDFGSSDKW 60 KDQPRVSKMV VSSSGPSKRP RAPSNGSQNA ACSVDGCKAD LSKCREYHRR HKVCEVHSKT 120 PVVMVGGQEQ RFCQQCSRFH LLVEFDEVKR SCRKRLDGHN RRRRKPKPDP ANSGSLFTNH 180 QGARFSYPHI FPTVTPEPNW TGIIKTEEST LYPHRPLHLI NRQHHFSGSS YSYNKERRRF 240 PFLQDGETVL DSRAMLETAS VCQPLLKTIP PSESSSSMMF SNSLTQVLDS DCALSLLSSP 300 TQNSGINLSQ VVPSADRIPM GQPLVSSLQY DGLARGTRSQ PSNSISPTGF SCPGMEDGHV 360 GTVLVSDAND AKLHCQGIFH VDGEGSDGTS QTLPFSWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-28 | 92 | 165 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 165 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008790766.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-105 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A2H3XYQ2 | 0.0 | A0A2H3XYQ2_PHODC; squamosa promoter-binding-like protein 16 | ||||
STRING | XP_008790766.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 4e-51 | SBP family protein |