PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1124891g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | NAC | ||||||||
Protein Properties | Length: 243aa MW: 28306.2 Da PI: 8.4744 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.3e-53 | 5 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+ +yL++++ ++++++ ++i+ev+i+k++Pw+Lp k + +e ewyfFs+rd+ky++g r+nrat+sg+Wkatg dk+ PDK_30s1124891g001 5 LPPGFRFHPTDEELIIYYLHNHAMSRPCPA-SIIPEVNICKFDPWELPGKSYLREGEWYFFSPRDRKYPNGGRPNRATASGFWKATGADKA 94 79****************************.89***************88888999*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s ++++vg+kk Lvfy+gr pkg+kt+W+mheyrl PDK_30s1124891g001 95 IHS-NSKHVGVKKALVFYRGRPPKGSKTEWIMHEYRL 130 ***.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-64 | 3 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.684 | 5 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 6 | 130 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MNFELPPGFR FHPTDEELII YYLHNHAMSR PCPASIIPEV NICKFDPWEL PGKSYLREGE 60 WYFFSPRDRK YPNGGRPNRA TASGFWKATG ADKAIHSNSK HVGVKKALVF YRGRPPKGSK 120 TEWIMHEYRL GQPSNGVFKP TRVDEWVLCR IHQKKQSMRI RDDGQEDCFV EETPHMKIIS 180 NLEENMPKFP RSFSLARLIE PDCSLDAQLF DELPNGPING LFDTRWETHS IKSNYLGMHH 240 LQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swm_B | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swm_C | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swm_D | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swp_A | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swp_B | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swp_C | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
3swp_D | 9e-64 | 2 | 159 | 17 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939827.1 | 1e-133 | NAC domain-containing protein 2 isoform X1 | ||||
Swissprot | K4BNG7 | 4e-85 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A3Q0HTG8 | 1e-101 | A0A3Q0HTG8_PHODC; NAC transcription factor 29-like | ||||
STRING | XP_008780790.1 | 1e-102 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 5e-84 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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