PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1113561g002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 157aa MW: 17545.6 Da PI: 8.0231 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 25.6 | 3.5e-08 | 9 | 49 | 52 | 92 |
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 ere+ +++l++eA++r dP +G+++ + +l+++ + l+ PDK_30s1113561g002 9 PERERCADTLMWEADWRSIDPANGCYNEVIRLKEENAMLRR 49 46999****************************99887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 7.3E-6 | 8 | 49 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MLKANDSIPE RERCADTLMW EADWRSIDPA NGCYNEVIRL KEENAMLRRV IRECGHCSRQ 60 PLPQPYRSPV PQPGRFWANG NNHNNNGGAN LIRRGINNNG GDVGGAMHLA EVVPQHMVNY 120 PLINNGNLIN GYHNPHPPIY MHQPGGQGNN GHGALYH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784488.1 | 1e-112 | LOB domain-containing protein 2-like | ||||
TrEMBL | A0A2H3XIX7 | 1e-111 | A0A2H3XIX7_PHODC; LOB domain-containing protein 2-like | ||||
STRING | XP_008784488.1 | 1e-111 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |