PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1106101g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family NAC
Protein Properties Length: 685aa    MW: 76372.7 Da    PI: 4.5612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1106101g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.81.5e-51351661128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lp GfrF+Ptdeelv++yLk k++g+ +++  vi+evd++k+ePwdLp k  +++++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd
  PDK_30s1106101g002  35 LPLGFRFRPTDEELVNHYLKGKINGRINSEVVVIPEVDVCKCEPWDLPdKsLIRSDDPEWFFFTPRDRKYPNGHRANRATEAGYWKATGKD 125
                         699***********************9888788**************96446677888********************************* PP

                 NAM  90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +++k  + +l+g+kktLvfy+grap+g++++W+mheyr 
  PDK_30s1106101g002 126 RMIKTKppGPSLIGMKKTLVFYRGRAPNGVRSNWIMHEYRT 166
                         *****9988899***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-5528171IPR003441NAC domain
PROSITE profilePS5100554.07535188IPR003441NAC domain
PfamPF023652.5E-2736165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MICFEGFGNP SCILSLIVVE AVVVRRKCVL PPESLPLGFR FRPTDEELVN HYLKGKINGR  60
INSEVVVIPE VDVCKCEPWD LPDKSLIRSD DPEWFFFTPR DRKYPNGHRA NRATEAGYWK  120
ATGKDRMIKT KPPGPSLIGM KKTLVFYRGR APNGVRSNWI MHEYRTSESE FDSGEQVGSQ  180
FLGPEYEQLD LDDFPNISSQ MPLSMEYSIS DIVDQGLHKK NLVLADYSVS EFLDEVLSNQ  240
DEDSLEVTDT QKDSVPRIVS DDHFCMIEED SLWDSASGKE SGSGSDVDTV AAIIQDGLEF  300
DASACSYESA FLASGSSHTE NNKAYHVTRL DQDSLLLEEA KTGLPLRNRS LRQNVSSMGS  360
AANFWDQEST RKLEFIKDGL SNNLFNSTER PTCQASTSGT GIEIRTRQDP PSLDDLMEEQ  420
GLAFRRLLLQ KINHTGSISG TDRELSSKKD DNEVKSVITE SGECAEHQIA EDTEVSGSIF  480
LDDVDSTSDH GSISGTDREL SSKKDDNEVK SVITESGECA EHQIAEDTEV SGSIFLDNVD  540
STSDHDDTTS TEARTAFSEI SREPKSVLRR RRRGAHENSD KLEVLSLHAE SPAFYTTQWK  600
TCSCYSATAT FRTARGYFHY TMGYLPTSHR TATLECQGQL PITSPQDRCN AAELLRLAEL  660
EKGWLVAVRR FTAFAECIFA IPTVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-443416514139Stress-induced transcription factor NAC1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783552.10.0protein NTM1-like 9
TrEMBLA0A2H3XGT20.0A0A2H3XGT2_PHODC; protein NTM1-like 9
STRINGXP_008783552.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.38e-70NAC transcription factor-like 9