PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1103751g023 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | WRKY | ||||||||
Protein Properties | Length: 469aa MW: 51016 Da PI: 7.8854 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.6e-31 | 255 | 313 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+ PDK_30s1103751g023 255 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILITTYEGNHNHP 313 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-33 | 239 | 315 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-28 | 247 | 315 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.735 | 249 | 315 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.7E-37 | 254 | 314 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 256 | 313 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MERPKEMALL NSDGFSSHDR GRSVDEGVDR RDGIEEVDFF SESHRGDKDG TARAGVSHDR 60 QGKHTGLHLL TMSSRVGQGA GEEKKPSNEL VMLQGELNRL GEENRKLRIM LDQLTRSYGA 120 LHNEYILTMQ QRAQDFRHGQ DNKTDTSSPV AVSEHQFMEP GQTSMRNIEH SGAEDEEQSQ 180 TLSNGIANRG SREQGTIPFT KRQLPVDDGP SEQTSPSWGS NKNPRLMQER STDTELPCRK 240 ARVSVRARSD APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK QVQRCAEDKT 300 ILITTYEGNH NHPLPPTAHH DSLMAAGGFF QPVPYASSVA TLSASAPFPT ITLDLTQSPS 360 PLQLSRGHLP SIPFSMPPSM YLPHKLPPGV VGPPAVQFGP RQQSMVETVT AAIATDPNFT 420 TALAAAIKSI MGSPRSTSGS GGGNSSPTGP QVGPGPPQFP QSCTTFSTN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-22 | 241 | 316 | 1 | 75 | WRKY transcription factor 1 |
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00115 | ampDAP | Transfer from AT4G01720 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010909377.1 | 0.0 | probable WRKY transcription factor 47 | ||||
TrEMBL | A0A199V8X6 | 1e-152 | A0A199V8X6_ANACO; WRKY transcription factor 6 | ||||
STRING | XP_002515176.1 | 1e-135 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 1e-83 | WRKY family protein |