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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PDK_30s1101201g001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family |
M-type_MADS |
Protein Properties |
Length: 106aa MW: 12393.6 Da PI: 10.7121 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PDK_30s1101201g001 | genome | PDK | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.5 | 2.7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++
PDK_30s1101201g001 9 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 59
79***********************************************85 PP
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_A | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-20 | 1 | 62 | 1 | 62 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KF574389 | 6e-76 | KF574389.1 Cocos nucifera AGAMOUS-like MADS-box protein mRNA, complete cds. |