PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1098031g002
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 659aa    MW: 72380.4 Da    PI: 6.467
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1098031g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.34.9e-17437483455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  PDK_30s1098031g002 437 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 483
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.2E-21430493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-21431499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.501433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-17436487No hitNo description
PfamPF000101.9E-14437483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-19439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MRTETAAGGK SIPFLFHSLH LLFFKAAHSI TVELEEKGTT LEKEANSCAM NHYVPHWNLE  60
DDSTSFRVLP ATNQKKTIWS RSAPFPSISS TISRLDDELV ELVWQDGRVI THSQTHRKSP  120
PAIGEFKQAQ KAEPAPKCRG PVGIWSNLSQ EDEAEPAPKC RGPLGIWSNL SQEDKTASWF  180
QYSLDDSLEK EFCPEFFCGM PNVDAIGTGK MTKDVAAEGE RPTKFGAIEE TNVFAGSDPE  240
QSSIRFKENT MPPPKTNVIA STQQAPCLPS SNLVNFPHFS RPGPVMADVG SLNGQLGKES  300
GKRIRLGAGE STSMMTIASS ICGSNQIQAQ ADPSHTMSSD TAGVAAIGLK EDAQMTSPSE  360
RTRTNTYDVT VTSSSGGSGC SFGRAGRQSA INQSHKRKGR DAEEFECQSE EADYEYVEAN  420
KLAQRSPFTR RSRSAEVHNL SERRRRDRIN EKMKALQELI PHCNKTDKAS MLDEAIEYLK  480
SLQLQVQIMW MGNGMAPMMF PAVQQYMSRM GMGMGHASMP SIHGPVQLPR VPFINQSIAS  540
TSTAHQMPLC LSPALNALNF PNQMQNVHLP GSYAPYLGFH HMRAPSQEMD FYTYGSRMVQ  600
QNQTAAAPSS SILPTAGEVP AENNQNNKSE ENLVRPCDVD CHLVVSSPDV GLMDTPITL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1441446ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4002763e-35JN400276.1 Oryza sativa Japonica Group rice phytochrome-interacting factor 4 (PIF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008811817.20.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLA0A2H3ZCM90.0A0A2H3ZCM9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
STRINGXP_008811817.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.35e-41phytochrome interacting factor 3-like 5