PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1094891g003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27511.4 Da PI: 7.5016 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.5 | 1.6e-05 | 188 | 225 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L A+eYIk L PDK_30s1094891g003 188 RKEKLGDRIAALQQLVSPF-----GKTDTASVLLDAIEYIKCL 225 7788899*********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.261 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.79E-11 | 186 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.42E-5 | 186 | 229 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-7 | 190 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MADSFQKASP TLQPTPPRLP ETTLYEGKLM YDSGLMGGET HGGGRMSEMQ QWVSLPANDP 60 IVCTSSTSFL ETGDPSRAWN NEIFGRSSSY MSDWIAEAAP VQAIKEDNHR QHSVQPLHRF 120 SAKIPFSLLK NTEGGACPPF PLLNQSGHPL LRDNDRIKKP SPDNCSFSFR QKQLEKPITS 180 RITPLKVRKE KLGDRIAALQ QLVSPFGKTD TASVLLDAIE YIKCLHEQLT VLCSPYVKMS 240 YEITEMG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008803478.1 | 1e-163 | transcription factor bHLH66-like isoform X1 | ||||
TrEMBL | A0A2H3YT35 | 1e-162 | A0A2H3YT35_PHODC; transcription factor bHLH66-like isoform X1 | ||||
STRING | XP_008803478.1 | 1e-162 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP50868 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05170.1 | 5e-22 | bHLH family protein |