PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1092891g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | LBD | ||||||||
Protein Properties | Length: 202aa MW: 21867 Da PI: 8.7227 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.4 | 3.7e-41 | 38 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++p+ +r da++slvyeA +r+rdPvyG++g i++lqq+++ l+ PDK_30s1092891g001 38 PCAACKHLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPTAQRADAANSLVYEASVRLRDPVYGCMGAISALQQKVQALE 128 7****************************************************************************************** PP DUF260 92 aelallkee 100 ael+++++e PDK_30s1092891g001 129 AELQRARAE 137 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.246 | 37 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-41 | 38 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene3D | G3DSA:1.20.58.60 | 7.8E-4 | 89 | 149 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MSTERERFDE VGKKIKREAD GATDPMGSPV GTLNIITPCA ACKHLRRRCA QECPFSPYFS 60 PHEPQKFASV HKVFGASNVS KMLMEVPTAQ RADAANSLVY EASVRLRDPV YGCMGAISAL 120 QQKVQALEAE LQRARAEILK LKYRQTSVQV LPASHAAFLA PVDVSVAAPP SIQTSPPPPA 180 SAASSSSFSI YINPNENVTY FG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 38 | 140 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 38 | 140 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008792197.1 | 1e-148 | LOB domain-containing protein 15-like | ||||
Swissprot | Q8L5T5 | 1e-74 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2H3Y2F6 | 1e-147 | A0A2H3Y2F6_PHODC; LOB domain-containing protein 15-like | ||||
STRING | XP_008792197.1 | 1e-147 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-72 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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