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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PDK_30s1090391g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
MYB |
| Protein Properties |
Length: 345aa MW: 37719.5 Da PI: 6.2396 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1090391g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.8 | 5.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l + ++++G g+W++ ++ g++R++k+c++rw +yl
PDK_30s1090391g001 14 KGPWTPEEDKKLTEFIQKHGHGSWRLLPKNAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
|
| 2 | Myb_DNA-binding | 58.3 | 1.8e-18 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++++eE++l+vd++ lG++ W++Ia++++ gRt++++k++w+++l
PDK_30s1090391g001 67 RGKFSEEEEKLIVDLHSALGNK-WSLIAARIP-GRTDNEVKNYWNTHL 112
89********************.*********.************996 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MGRSPCCEEV SLKKGPWTPE EDKKLTEFIQ KHGHGSWRLL PKNAGLNRCG KSCRLRWTNY 60
LRPDIKRGKF SEEEEKLIVD LHSALGNKWS LIAARIPGRT DNEVKNYWNT HLRKKLLRMG 120
IDPVTHMPRT DLNLPGSLST VLADANFGNW SSLASVLKLQ ADAALAARMQ VVQTLLKVLT 180
NSPTSNLDLM GLLGSASLGN HQLSGLLQLS RQYEGLIDSS LSLHGSIQMP SSLPNLSFQN 240
LLSNVQACTK SSLSLDGEVA AQLDGSGLSE HGTESNGFSA NFYDFPTSNS TASLLPASSE 300
DTHIDQTQGP VTSSNVSSIS APFEAWEDLN LDDLSSDFGW KDILE
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
