PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PDK_30s1084291g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C3H

Protein Properties

Length: 336aa MW: 37356 Da PI: 6.6589

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1084291g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.1	1.5e-08	123	143	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg PDK_30s1084291g001 123 ACPDFRK-GNCKRGDACEYAHG 143 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.5E-6	118	144	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.92	119	145	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-6	123	143	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-5	123	145	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	153	176	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.343	153	177	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MMMMGERSHH NPTVHVPPWT PFDDPAAGVA YNLPMSGVAG AGGGDCSPYT LAEPSLAALQ 60 RFLPCNEIYA AGEDTDESEP ADAPVDAYSC DEFRMYEFKC PYAHPGEKAR RRDPRKFHYS 120 GTACPDFRKG NCKRGDACEY AHGVFECWLH PARYRTQPCK DGTACRRRVC FFAHTPEQLR 180 VLPQQQQQHQ QLQQTPRTLS ATDSYDGSPL RQQHTVECYF SKNLVSSSPS STLVSSSPSS 240 TLISPPMSPP SESPPMSPRG VQAVRRASWP MNELLASLWQ FQLSKEEEPV ERVESGRALR 300 ARMFERLSKD SILVQGESTP MAAPAPDVGW VSELVK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010925500.1	0.0	zinc finger CCCH domain-containing protein 2
Swissprot	Q9FU27	8e-86	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2H3Y6C6	1e-164	A0A2H3Y6C6_PHODC; zinc finger CCCH domain-containing protein 2-like
STRING	XP_008794080.1	1e-165	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	8e-69	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]