PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1082231g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ERF
Protein Properties Length: 188aa    MW: 20807 Da    PI: 9.3956
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1082231g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.1e-211968255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  PDK_30s1082231g001 19 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEQAAIAYDEAALRFKG 68
                        7********.**********94....45***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.8E-331877IPR001471AP2/ERF domain
SMARTSM003802.1E-371982IPR001471AP2/ERF domain
PROSITE profilePS5103224.8291976IPR001471AP2/ERF domain
CDDcd000184.76E-321977No hitNo description
PfamPF008472.5E-141968IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-221977IPR016177DNA-binding domain
PRINTSPR003675.8E-122031IPR001471AP2/ERF domain
PRINTSPR003675.8E-124258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MERELSQPAQ DQGTVRRRHY RGVRQRPWGK WAAEIRDPKK AARVWLGTFD TAEQAAIAYD  60
EAALRFKGTK AKLNFPERVQ GRTDLGFLVS RGIPERPPEP ITPSAAASYP DLLQYAQLLQ  120
SRDEDFQNVA SGLYIGGSLA SGSSQMSPAS MPGSSQEFLD FSSQFGTSSS SSSWPHGDQK  180
DKDRSQQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-271880467ATERF1
3gcc_A5e-271880467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008791015.11e-135ethylene-responsive transcription factor ERF113-like
SwissprotQ9FH543e-44EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2H3XZ841e-134A0A2H3XZ84_PHODC; ethylene-responsive transcription factor ERF113-like
STRINGXP_008791015.11e-134(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.15e-27ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]