PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PDK_30s1080531g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 218aa MW: 23170.3 Da PI: 8.467

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1080531g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.7	1.8e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrr+Ca++C+++pyfp ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq++ l+ PDK_30s1080531g001 42 PCAACKLLRRRCAHECPFSPYFPPHDPQKFASVHKVFGASNVSKMLMEVPESRRADAANSLVYEANVRLRDPVYGCMGAISELQQQVQALE 132 7**************************************************************************************** PP DUF260 92 aelallkee 100 aela++++e PDK_30s1080531g001 133 AELAAVRAE 141 ***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.285	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.1E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MSPARERLDE VGKKIKREPD VPDRKARGHL PGPVGTSNAI TPCAACKLLR RRCAHECPFS 60 PYFPPHDPQK FASVHKVFGA SNVSKMLMEV PESRRADAAN SLVYEANVRL RDPVYGCMGA 120 ISELQQQVQA LEAELAAVRA EILNYKYRSA SATVLPTSHA AALLASSGEV SVAAPPPITT 180 PTAPPAAPAA ASSSSMYTAA SSSTDYSSIA SENVPYFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	36	145	5	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	36	145	5	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008776451.1	1e-157	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-76	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2H3X0E3	1e-156	A0A2H3X0E3_PHODC; LOB domain-containing protein 15-like
STRING	XP_008776451.1	1e-157	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-68	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]