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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PDK_30s1076451g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
NAC |
| Protein Properties |
Length: 388aa MW: 43388.2 Da PI: 6.882 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1076451g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.6 | 8.7e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPt+eel+++yL+kkv+++k++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+
PDK_30s1076451g001 11 VPPGFRFHPTEEELLNYYLRKKVASEKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGR 100
69****************************.9***************964443122456******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
dk +++ + + +g++ktLvfykgrap+g+k+dW+mheyrl
PDK_30s1076451g001 101 DKVIYT-SFKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
******.8889***************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009809 | Biological Process | lignin biosynthetic process |
| GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis |
| GO:0009901 | Biological Process | anther dehiscence |
| GO:0010047 | Biological Process | fruit dehiscence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEKIDL DVIRDVDLNK LEPWDIQEKC 60
RIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYTSFKR IGMRKTLVFY 120
KGRAPHGQKS DWIMHEYRLD DHSDSSSQSH VSGSIGEAAN QEDGWVVCRV FKKKNHHKAM 180
DSPHNCSSIT SDAKTQMIHS GSDDALDQIL QYMGRSCKQE SEAISNHNIS SNPNSLGIRY 240
LRPIETTLGT SLHERFMKLP ALESPTIPSL PNDYHPPPSD HPCGNQMGYT LETIHAVVNM 300
DSAYHAETGI NDWAALDRLL VASHLNGQSE ASKQLACFDD PGFNYCSAAK LPNNSQDYHH 360
GGGSGGGDED LWSFTRSASS DHISHVSL
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 3e-49 | 8 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 3e-49 | 8 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 3e-49 | 8 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 3e-49 | 8 | 175 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 3e-49 | 8 | 175 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 3e-49 | 8 | 175 | 14 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 3e-49 | 8 | 175 | 14 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
BMC Plant Biol., 2014. 14: p. 344
[PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
GM Crops Food, 2014. 5(4): p. 302-20
[PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
Plant Cell Physiol., 2016. 57(1): p. 35-45
[PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
Plant Physiol., 2017. 175(1): p. 333-350
[PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
[PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
PLoS Genet., 2019. 15(1): p. e1007928
[PMID:30657769]
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