PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s1076031g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB_related

Protein Properties

Length: 543aa MW: 59087.6 Da PI: 8.1603

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1076031g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26	2.2e-08	82	108	1	28
TSSS-HHHHHHHHHHHHHTTTT-HHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIa 28 r rWT+eE+e++++a k++G W +I PDK_30s1076031g003 82 RERWTEEEHEKFLEALKLYGRA-WPRIE 108 78******************88.98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.95E-6	76	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-5	82	108	IPR009057	Homeodomain-like
CDD	cd00167	0.00229	84	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MATRSGGAGE GVPLELQSLI SRFIEMDKSR RPSLNPIHIP DRRICVDIGT SAVNSHQSKE 60 FSSLVDELAM KVRKPYTITK QRERWTEEEH EKFLEALKLY GRAWPRIEVT VSLPLYVHGW 120 SYLIYKVVRE PGTAKAIGIP PPRPKRKPLH PYPRKLGNLA SKVLPVLEQP AWSSLSVPSV 180 FELENSSPVS VLSAAGSDTI GSTISNLPNG CASSVSSATR SDLVGMLITK QETGCQSPAS 240 VEDENRSASP GPVSTCLVKE DKSQMEVDLS SKDETPSKES SPIEAQATCL RLFGKTVLVT 300 NAQKPCSSSV GNAMQSRMSL PIVDNSGHNV CTDMDLQTST KPVLQTPAQD DFGGGPGKNA 360 RSPGNGGTSP MFYCLPSHGD LRESKEAASP LPWWWAFYGT LPAFPFIIVP QNMSSTQSRP 420 QTCTEASDGK DSQKEGSWTG SNTAYAGRAP IGAENSDAVD SQQGAEHLKE PAPASRRRRP 480 SENSAFGSLK VKTDKSPRGF VPYKRCLAEK QAEQHCQMVN EERDGQARWF LFGSQGRDVV 540 HCS

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MATRSGGAGE GVPLELQSLI SRFIEMDKSR RPSLNPIHIP DRRICVDIGT SAVNSHQSKE  60
FSSLVDELAM KVRKPYTITK QRERWTEEEH EKFLEALKLY GRAWPRIEVT VSLPLYVHGW  120
SYLIYKVVRE PGTAKAIGIP PPRPKRKPLH PYPRKLGNLA SKVLPVLEQP AWSSLSVPSV  180
FELENSSPVS VLSAAGSDTI GSTISNLPNG CASSVSSATR SDLVGMLITK QETGCQSPAS  240
VEDENRSASP GPVSTCLVKE DKSQMEVDLS SKDETPSKES SPIEAQATCL RLFGKTVLVT  300
NAQKPCSSSV GNAMQSRMSL PIVDNSGHNV CTDMDLQTST KPVLQTPAQD DFGGGPGKNA  360
RSPGNGGTSP MFYCLPSHGD LRESKEAASP LPWWWAFYGT LPAFPFIIVP QNMSSTQSRP  420
QTCTEASDGK DSQKEGSWTG SNTAYAGRAP IGAENSDAVD SQQGAEHLKE PAPASRRRRP  480
SENSAFGSLK VKTDKSPRGF VPYKRCLAEK QAEQHCQMVN EERDGQARWF LFGSQGRDVV  540
HCS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008812464.1	0.0	protein CCA1-like isoform X1
TrEMBL	A0A2H3ZEW5	0.0	A0A2H3ZEW5_PHODC; protein CCA1-like isoform X1
STRING	XP_008812464.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7783	36	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-27	MYB_related family protein