PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1076031g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

NAC

Protein Properties

Length: 465aa MW: 52854.6 Da PI: 4.712

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1076031g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	184.1	3.3e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelv +yLk+k++g k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd PDK_30s1076031g001 6 LPPGFRFHPTDEELVAYYLKRKINGLKIEL-EIIPEVDLYKCEPWDLPdKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKD 95 79**************************.99**********95434555777***************************** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++v+s +++++g+kktLvfykgrap+g++t+Wvmheyrl PDK_30s1076031g001 96 RKVTS-QKRTMGMKKTLVFYKGRAPHGSRTNWVMHEYRL 133 *.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-65	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	62.069	6	156	IPR003441	NAC domain
Pfam	PF02365	7.8E-31	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MTPTGLPPGF RFHPTDEELV AYYLKRKING LKIELEIIPE VDLYKCEPWD LPDKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS QKRTMGMKKT LVFYKGRAPH 120 GSRTNWVMHE YRLDEKECET NSGLQDAYSL CRVFKKTMPA PKIIDQYDVS NEEHSRRMSS 180 GNTSTLDALT SGREDKESCG YLYPPETCSS DLIQGVPCDA NAPITEKWVQ LLADESFRSA 240 PMLFDNPLNS CYVQSEVDVA LECAKLQHRL SLPPLELEDF PQIDFLNSKT LEYGFIEENT 300 SEVDALQEIL SVASASQELI NNPNYPYAWT KVSPYFTNPI EEQKIDGSTQ LCQMESVEEQ 360 ASLRDISALE EDLMEEKKTV ESLRTITMPM NDTVKKKPTH IPSQSIDLPT GFTGIHQSAA 420 YEEDRQLDFY FSTPTFDVIA KGDTNHGYFV SSGSMAEALF IMLSP

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MTPTGLPPGF RFHPTDEELV AYYLKRKING LKIELEIIPE VDLYKCEPWD LPDKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS QKRTMGMKKT LVFYKGRAPH  120
GSRTNWVMHE YRLDEKECET NSGLQDAYSL CRVFKKTMPA PKIIDQYDVS NEEHSRRMSS  180
GNTSTLDALT SGREDKESCG YLYPPETCSS DLIQGVPCDA NAPITEKWVQ LLADESFRSA  240
PMLFDNPLNS CYVQSEVDVA LECAKLQHRL SLPPLELEDF PQIDFLNSKT LEYGFIEENT  300
SEVDALQEIL SVASASQELI NNPNYPYAWT KVSPYFTNPI EEQKIDGSTQ LCQMESVEEQ  360
ASLRDISALE EDLMEEKKTV ESLRTITMPM NDTVKKKPTH IPSQSIDLPT GFTGIHQSAA  420
YEEDRQLDFY FSTPTFDVIA KGDTNHGYFV SSGSMAEALF IMLSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-59	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-59	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-59	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-59	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	5e-59	1	162	15	174	NAC domain-containing protein 19
3swm_B	5e-59	1	162	15	174	NAC domain-containing protein 19
3swm_C	5e-59	1	162	15	174	NAC domain-containing protein 19
3swm_D	5e-59	1	162	15	174	NAC domain-containing protein 19
3swp_A	5e-59	1	162	15	174	NAC domain-containing protein 19
3swp_B	5e-59	1	162	15	174	NAC domain-containing protein 19
3swp_C	5e-59	1	162	15	174	NAC domain-containing protein 19
3swp_D	5e-59	1	162	15	174	NAC domain-containing protein 19
4dul_A	6e-59	1	162	12	171	NAC domain-containing protein 19
4dul_B	6e-59	1	162	12	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026666241.1	0.0	NAC domain-containing protein 45-like
Swissprot	A4VCM0	1e-101	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A3Q0IGZ0	0.0	A0A3Q0IGZ0_PHODC; NAC domain-containing protein 45-like
STRING	XP_008813657.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6624	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-118	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]