PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1075261g004
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 546aa    MW: 58549.3 Da    PI: 5.0931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1075261g004genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.7e-08324411555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC........................................TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkas.....................................kapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR++i +++ +L+ l+P++                                           K +Ka++L + ++Y+k Lq
  PDK_30s1075261g004 324 HSIAERLRREKIAERMKNLQGLVPNSNkrsvlslylsmllldeytadieeyhaelkswfsgsclLHLMFKTDKASMLDEIIDYVKFLQ 411
                         99***********************666***********************************988889******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.38E-12317349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.08E-7317415No hitNo description
PROSITE profilePS5088814.424319410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13321348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-5324411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-7325416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.38E-12389421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13390420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDDFIDPFLS PLTWPDANTS ARSSWIGTAV SQTTSLVAGS MEAYGGDEKN PPISVIPSNR  60
IIGNACTDEL NLHSHDSTSS MFLDGNLKYA IDKDIFPGEK LSLHKVHRQN SESSLQDNAT  120
QESNFSLQGV IESNSTAGTF GSELNPSCSV TLPHSTLTMG SSIESNGCEL STFQQSLGDA  180
HSISSLPAMW PSSYTGVSSL MGQGRLQAFG FQGLESDNVM LRETCVENGK FAQLEDLPGA  240
SLHEHNEPHN PNLSSFSAGQ QIKLPSVGLQ QQLPPSTQAN TGKHHVNHSS NTQSQSAPAN  300
AGGGCNGAVK PRVRARRGQA TDPHSIAERL RREKIAERMK NLQGLVPNSN KRSVLSLYLS  360
MLLLDEYTAD IEEYHAELKS WFSGSCLLHL MFKTDKASML DEIIDYVKFL QLQVKVLSMS  420
RLGAAGAVVP LLTDSQSEGS GSLLLSTSSS SVGQGADLSE SQDTLAFEQE VAKLMESDVT  480
TAMQYLQNKG LCLMPIALAT AISNQQGSSS CSIPPDRRKA DMNHGVICPE DGANGCNGPG  540
VKREEP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797368.10.0transcription factor bHLH10-like
RefseqXP_008797369.10.0transcription factor bHLH10-like
RefseqXP_026662525.10.0transcription factor bHLH10-like
RefseqXP_026662526.10.0transcription factor bHLH10-like
RefseqXP_026662527.10.0transcription factor bHLH10-like
RefseqXP_026662528.10.0transcription factor bHLH10-like
TrEMBLA0A2H3YEK70.0A0A2H3YEK7_PHODC; transcription factor bHLH10-like
STRINGXP_008797366.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.14e-52LJRHL1-like 3