PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PDK_30s1071311g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

MYB

Protein Properties

Length: 275aa MW: 31245 Da PI: 6.7093

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1071311g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ede+lv ++k +G g+W+ + + g++R++k+c++rw++yl PDK_30s1071311g001 14 RGAWTASEDEILVSYIKAHGEGNWRNLPIRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	49.8	7.9e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++l++ ++k+lG++ W++Ia +++ gRt++++k++w++ PDK_30s1071311g001 67 RGNISEEEEKLIIILHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899****************.*****.**********87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.079	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.65E-28	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.6E-23	15	68	IPR009057	Homeodomain-like
CDD	cd00167	5.74E-10	16	61	No hit	No description
PROSITE profile	PS51294	26.136	62	116	IPR017930	Myb domain
SMART	SM00717	8.5E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-14	67	111	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-24	69	116	IPR009057	Homeodomain-like
CDD	cd00167	9.84E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGRKPCCIKE GLNRGAWTAS EDEILVSYIK AHGEGNWRNL PIRAGLKRCG KSCRLRWLNY 60 LRPNIKRGNI SEEEEKLIII LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLRKKVHGQP 120 TQKSEQTNSM PEAPLTNPNA TTSEPVVRTK ARRCTKAFFL HDQCLPSPPN NQQPLELATK 180 ESKSSVDTPQ SYDSLNDHLN DGFFHAIGEG NQSGGSTMQE GDNISWTMSF DDAHLFDGST 240 LMDWTGMDCF EPNFTSHLMS SDPFLDSEEE WFQWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-27	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008786610.1	0.0	transcription repressor MYB5-like
TrEMBL	A0A2H3XP04	0.0	A0A2H3XP04_PHODC; transcription repressor MYB5-like
STRING	XP_008786610.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	2e-52	MYB family protein