 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PDK_30s1068381g001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
| Family |
C3H |
| Protein Properties |
Length: 170aa MW: 18919.6 Da PI: 8.9244 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1068381g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 30.9 | 4.8e-10 | 21 | 45 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt+lC+ f G C+ G++C+FaHg
PDK_30s1068381g001 21 FKTRLCQKFKT-GSCPWGNNCNFAHG 45
79*********.*************8 PP
|
| 2 | zf-CCCH | 26.8 | 8.9e-09 | 75 | 100 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
k e+Cr f+++ C+y drC++ H++
PDK_30s1068381g001 75 KNEICRKFSKGEVCPYEDRCTYLHVQ 100
679*******66************86 PP
|
| 3 | zf-CCCH | 30.4 | 6.8e-10 | 134 | 158 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C + tG+C++G+rC FaHg
PDK_30s1068381g001 134 KAKICYKWETTGHCSFGERCIFAHG 158
7789********************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.44E-9 | 18 | 51 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.713 | 20 | 47 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.6E-5 | 20 | 46 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-16 | 20 | 53 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-7 | 21 | 45 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 6.0E-9 | 72 | 102 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.7E-4 | 73 | 100 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.23 | 73 | 101 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.71E-7 | 73 | 102 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.2E-6 | 77 | 100 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 3.5E-10 | 130 | 159 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-8 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.943 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 3.4E-6 | 132 | 159 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.4E-7 | 134 | 158 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 170 aa
Download sequence Send
to blast |
MPHPPNPQTN PPIRGTSCMF FKTRLCQKFK TGSCPWGNNC NFAHGIEELR QPPPNWKALV 60
AEGQVNGNDQ QRMRKNEICR KFSKGEVCPY EDRCTYLHVQ RENLGMAMGS MAGPGSIGGF 120
SSAADCNGSN QKPKAKICYK WETTGHCSFG ERCIFAHGIA VIQKDRFSTS
|
