PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1067671g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 67aa MW: 7661.93 Da PI: 10.5411 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.6 | 1.4e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaevavi+fs++gklyeys+ PDK_30s1067671g004 9 KRIENKINRQVTFSKRRSGMLKKAHEISVLCDAEVAVIVFSTKGKLYEYST 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.282 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.9E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-29 | 2 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.07E-36 | 2 | 66 | No hit | No description |
PRINTS | PR00404 | 4.9E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRSGMLK KAHEISVLCD AEVAVIVFST KGKLYEYSTD 60 ASQEVLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 67 | 1 | 67 | MEF2C |
5f28_B | 1e-20 | 1 | 67 | 1 | 67 | MEF2C |
5f28_C | 1e-20 | 1 | 67 | 1 | 67 | MEF2C |
5f28_D | 1e-20 | 1 | 67 | 1 | 67 | MEF2C |
6byy_A | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6byy_B | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6byy_C | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6byy_D | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6bz1_A | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 1 | 67 | 1 | 67 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF411842 | 2e-80 | AF411842.1 Elaeis guineensis MADS box transcription factor (SQUA3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008785630.1 | 6e-38 | truncated transcription factor CAULIFLOWER A isoform X1 | ||||
Refseq | XP_008785631.1 | 4e-38 | truncated transcription factor CAULIFLOWER D isoform X2 | ||||
Swissprot | Q6E6S7 | 2e-35 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | A0A2H3XLL4 | 1e-36 | A0A2H3XLL4_PHODC; truncated transcription factor CAULIFLOWER A isoform X1 | ||||
TrEMBL | A0A2H3XLN8 | 9e-37 | A0A2H3XLN8_PHODC; truncated transcription factor CAULIFLOWER D isoform X2 | ||||
STRING | XP_008785630.1 | 2e-37 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-37 | AGAMOUS-like 8 |
Publications ? help Back to Top | |||
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