PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1065091g004

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

LBD

Protein Properties

Length: 226aa MW: 25429.7 Da PI: 8.7381

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1065091g004	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	111.6	5.4e-35	84	180	5	101
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 C++lr+kC +dCvlap+fp++qp++fa+vh++FGasnv+++l++lp ++++ a++++ eA +r+rdPvyG+vg+i+ lqq+++ ++ ela PDK_30s1065091g004 84 CRYLRKKCGEDCVLAPHFPSTQPHRFACVHRIFGASNVSRMLQQLPSDKQPPAADAISSEAYWRVRDPVYGSVGIISMLQQEIHMVQRELA 174 ******************************************************************************************* PP DUF260 96 llkeel 101 ++++++ PDK_30s1065091g004 175 ETQAQI 180 *99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.79	79	180	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-34	84	177	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MQLSTNEIRN NCISGSIDHL IIAQNTARPH ESMGTALTSA NRNYTQRRTA YKSSRRLSTW 60 EFLSLVLLSG KDAPINPLFG KLRCRYLRKK CGEDCVLAPH FPSTQPHRFA CVHRIFGASN 120 VSRMLQQLPS DKQPPAADAI SSEAYWRVRD PVYGSVGIIS MLQQEIHMVQ RELAETQAQI 180 AVYQTQLQSQ LAQPSEALHF DAQLNDHQFG SDSTNFNGFS QSPHFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-29	73	183	2	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-29	73	183	2	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009383083.1	6e-53	PREDICTED: LOB domain-containing protein 24-like
TrEMBL	M0RPH8	1e-51	M0RPH8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P04980_001	2e-52	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-41	LOB domain-containing protein 24