![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PDK_30s1061641g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 211aa MW: 23211.5 Da PI: 10.5485 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97.8 | 1.1e-30 | 139 | 205 | 1 | 67 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 +CaaCk+lrrkC++dCv+apyfp +qp+kf vh++FGasnv+kll++l++ +reda++sl+yeAe PDK_30s1061641g001 139 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEAEL 205 7****************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.025 | 138 | 211 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-30 | 139 | 205 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MTRWMNGVTR TKGGKEISKE LYIFQSDFTI TSKTHTYLPD TLTGSDKIHP IRVESSQPSP 60 TSPLARKSEI KKRGEKEAQP RAEAGPGKRK EKKNSRRIKR IQEKRKEGRV IASHGIVVGP 120 GPGIVSGASS STAASASSPC AACKFLRRKC QPDCVFAPYF PPDQPQKFVH VHRVFGASNV 180 TKLLNELHPY QREDAVNSLA YEAELPISAA G |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 129 | 204 | 1 | 76 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 129 | 204 | 1 | 76 | LOB family transfactor Ramosa2.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB200237 | 3e-76 | AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds. | |||
GenBank | AK071407 | 3e-76 | AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence. | |||
GenBank | AK119575 | 3e-76 | AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence. | |||
GenBank | AK373607 | 3e-76 | AK373607.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3036G24. | |||
GenBank | AP003431 | 3e-76 | AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03. | |||
GenBank | AP014957 | 3e-76 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 3e-76 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. | |||
GenBank | EF540766 | 3e-76 | EF540766.1 Oryza sativa Japonica Group LOB domain protein 6 mRNA, complete cds. |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G65620.4 | 3e-38 | LBD family protein |