PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1061641g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family LBD
Protein Properties Length: 211aa    MW: 23211.5 Da    PI: 10.5485
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1061641g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.81.1e-30139205167
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAea 67 
                         +CaaCk+lrrkC++dCv+apyfp +qp+kf  vh++FGasnv+kll++l++ +reda++sl+yeAe 
  PDK_30s1061641g001 139 PCAACKFLRRKCQPDCVFAPYFPPDQPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEAEL 205
                         7****************************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.025138211IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-30139205IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MTRWMNGVTR TKGGKEISKE LYIFQSDFTI TSKTHTYLPD TLTGSDKIHP IRVESSQPSP  60
TSPLARKSEI KKRGEKEAQP RAEAGPGKRK EKKNSRRIKR IQEKRKEGRV IASHGIVVGP  120
GPGIVSGASS STAASASSPC AACKFLRRKC QPDCVFAPYF PPDQPQKFVH VHRVFGASNV  180
TKLLNELHPY QREDAVNSLA YEAELPISAA G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-37129204176LOB family transfactor Ramosa2.1
5ly0_B4e-37129204176LOB family transfactor Ramosa2.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2002373e-76AB200237.1 Oryza sativa Japonica Group CRLL3 mRNA for LOB domain protein, complete cds.
GenBankAK0714073e-76AK071407.1 Oryza sativa Japonica Group cDNA clone:J023089G14, full insert sequence.
GenBankAK1195753e-76AK119575.1 Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence.
GenBankAK3736073e-76AK373607.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3036G24.
GenBankAP0034313e-76AP003431.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1099D03.
GenBankAP0149573e-76AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126093e-76CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBankEF5407663e-76EF540766.1 Oryza sativa Japonica Group LOB domain protein 6 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.43e-38LBD family protein