PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1058241g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | C2H2 | ||||||||
Protein Properties | Length: 127aa MW: 13804.9 Da PI: 8.0783 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 42 | 62 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg F++ L H+r+H PDK_30s1058241g001 42 CSICGSEFNSGQALGGHMRRH 62 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-5 | 37 | 63 | No hit | No description |
Pfam | PF13912 | 2.9E-11 | 39 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 40 | 62 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 42 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MAVVAPAAEE KKAMVDEDML QISMNSFSKA IASSIKPRVH GCSICGSEFN SGQALGGHMR 60 RHRPLVIPEV PEAKKERTIL SLDLNLPAPS DDERAELQRP PSPAFSFPSK RPLIFSASAS 120 ALVDCRY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008801217.1 | 1e-87 | zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 3e-17 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A2H3YN25 | 3e-86 | A0A2H3YN25_PHODC; zinc finger protein ZAT5-like | ||||
STRING | XP_008801217.1 | 5e-87 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 1e-20 | C2H2 family protein |
Publications ? help Back to Top | |||
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