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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PDK_30s1054411g002 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family | WRKY | ||||||||
| Protein Properties | Length: 254aa MW: 28459.2 Da PI: 7.4324 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 96.6 | 1.7e-30 | 57 | 115 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+
PDK_30s1054411g002 57 SDFWSWRKYGQKPIKGSPHPRGYYRCSTSkGCSAKKQVERSRTDSSVLIITYTSDHNHP 115
699***********************9988****************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.20.25.80 | 1.6E-30 | 53 | 117 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 3.27E-25 | 55 | 117 | IPR003657 | WRKY domain |
| SMART | SM00774 | 3.9E-36 | 56 | 116 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 31.468 | 57 | 117 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.6E-25 | 58 | 115 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 254 aa Download sequence Send to blast |
KIVLQVVNCV AYLSTKGFAF PLLLASGKCI WKMVQKTVIT FRIESDAGKQ KGDCPPSDFW 60 SWRKYGQKPI KGSPHPRGYY RCSTSKGCSA KKQVERSRTD SSVLIITYTS DHNHPGPHLP 120 SISPNETFLQ SLSINQDCPT TKSPNQPNPT SEESLNKEKS PLPSPPKYSQ EITLQNPPTE 180 IGAHCHQLNI LFDEGDPLPY PNSMTFSSTA SKTNEENDFF NELEELPIPP SITNLVRESF 240 LDERILFLPS QTIF |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5w3x_B | 1e-21 | 57 | 117 | 17 | 79 | Disease resistance protein RRS1 |
| 5w3x_D | 1e-21 | 57 | 117 | 17 | 79 | Disease resistance protein RRS1 |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008812523.1 | 1e-164 | probable WRKY transcription factor 14 | ||||
| TrEMBL | A0A2H3ZEA2 | 1e-162 | A0A2H3ZEA2_PHODC; probable WRKY transcription factor 14 | ||||
| STRING | XP_008812523.1 | 1e-163 | (Phoenix dactylifera) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP14912 | 18 | 21 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G29280.1 | 2e-34 | WRKY DNA-binding protein 65 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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