PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1053721g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

TALE

Protein Properties

Length: 609aa MW: 67073 Da PI: 8.906

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1053721g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	328	365	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gL+ +qV++WF N R + PDK_30s1053721g001 328 FEHflHPYPKDSDKIMLAKQTGLSRSQVSNWFINARVR 365 664459******************************88 PP
2	BELL	123.6	8.1e-40	195	266	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kkakL+++l+eV++rY+qy++q+q+v+ssFeavag gsa+ Yt+lAl++iS++FrcL+daia+qi PDK_30s1053721g001 195 ERQELQMKKAKLVNMLDEVEQRYRQYHNQMQVVVSSFEAVAGTGSARTYTALALQTISKQFRCLRDAIAGQI 266 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.0E-62	122	264	IPR006563	POX domain
Pfam	PF07526	1.7E-50	128	263	IPR006563	POX domain
PROSITE profile	PS50071	12.082	306	369	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.1E-28	308	382	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-9	309	373	IPR001356	Homeobox domain
CDD	cd00086	2.97E-12	309	370	No hit	No description
SuperFamily	SSF46689	2.48E-17	310	377	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-18	326	365	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 609 aa Download sequence Send to blast
MATYFHGAPE IQPDGLQTLY LMNPNYVGYS DTAAAQGNMV LLNSMNSLNP MNHHQQQQHF 60 VGIPLQPTPI QAPAHDVSAI HGLVPRLHCN LWSPTPPSNS IDMASQLGPR RPSTMRISSG 120 VSGLQSFLMG SKYLKAAQQL LDEVVNVGQG IKGESAKGTS SKSPMKGNRD SEGTAAGTGE 180 EDTSTKRGAD LTTAERQELQ MKKAKLVNML DEVEQRYRQY HNQMQVVVSS FEAVAGTGSA 240 RTYTALALQT ISKQFRCLRD AIAGQIRATS RSLGEEETKS GGSRLRFVDH HLRQQRALQQ 300 LGMIQHNAWR PQRGLPERSV SILRAWLFEH FLHPYPKDSD KIMLAKQTGL SRSQVSNWFI 360 NARVRLWKPM VEEMYSEEMK DPEQNSADEK ASKSDANENS VSKSSAKQES SPTRTGQADS 420 LKTTQNHPND PRTSSVAAAP PSPLGNDRSH ASYYDNEAAM QPRLKKARRG ESLQHLISFD 480 MKSEETSNRE LLMKFMDGQQ RAGDQGFSLI GGTTNHGGSF GAYPIADLGR FDSEQFTPRF 540 SGNGVSLTLG LPHCENLSLS GAQPSFLSNE SMPSFNNNPS VAHPSNAYES IDIPNRKRYA 600 AQLLPDFVA

Sequence ? help Back to Top

Protein Sequence Length: 609 aa Download sequence Send to blast

MATYFHGAPE IQPDGLQTLY LMNPNYVGYS DTAAAQGNMV LLNSMNSLNP MNHHQQQQHF  60
VGIPLQPTPI QAPAHDVSAI HGLVPRLHCN LWSPTPPSNS IDMASQLGPR RPSTMRISSG  120
VSGLQSFLMG SKYLKAAQQL LDEVVNVGQG IKGESAKGTS SKSPMKGNRD SEGTAAGTGE  180
EDTSTKRGAD LTTAERQELQ MKKAKLVNML DEVEQRYRQY HNQMQVVVSS FEAVAGTGSA  240
RTYTALALQT ISKQFRCLRD AIAGQIRATS RSLGEEETKS GGSRLRFVDH HLRQQRALQQ  300
LGMIQHNAWR PQRGLPERSV SILRAWLFEH FLHPYPKDSD KIMLAKQTGL SRSQVSNWFI  360
NARVRLWKPM VEEMYSEEMK DPEQNSADEK ASKSDANENS VSKSSAKQES SPTRTGQADS  420
LKTTQNHPND PRTSSVAAAP PSPLGNDRSH ASYYDNEAAM QPRLKKARRG ESLQHLISFD  480
MKSEETSNRE LLMKFMDGQQ RAGDQGFSLI GGTTNHGGSF GAYPIADLGR FDSEQFTPRF  540
SGNGVSLTLG LPHCENLSLS GAQPSFLSNE SMPSFNNNPS VAHPSNAYES IDIPNRKRYA  600
AQLLPDFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	315	373	5	63	Homeobox protein Meis2
3k2a_B	2e-15	315	373	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008784116.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_008784117.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_017697314.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_026658810.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-140	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A2H3ZLM5	0.0	A0A2H3ZLM5_PHODC; BEL1-like homeodomain protein 1
STRING	XP_008784116.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4816	37	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-130	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]