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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1052321g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 173aa MW: 18840.7 Da PI: 9.0804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.2 | 1.2e-12 | 3 | 45 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YIk+L PDK_30s1052321g004 3 EAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLADAVSYIKEL 45 79*********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.272 | 1 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-16 | 2 | 51 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-12 | 3 | 50 | No hit | No description |
Pfam | PF00010 | 3.3E-10 | 3 | 45 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-17 | 3 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-18 | 3 | 63 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MAEAERQRRE KLNHRFYALR SVVPNVSRMD KASLLADAVS YIKELRTKVE ELEAEAKRVK 60 KEIIVDQGVG GAATTTSTTV SSVVSCGGGG LATMELEVKM LGPDALIRVH SENLSHPTAK 120 LMGALRELEV HVHHASVSTV KEVTVQDVVV RVPYALQVND GLRAALLGRM DKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_B | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_E | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_F | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_G | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_I | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_M | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
5gnj_N | 2e-22 | 3 | 63 | 11 | 71 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP257462 | 2e-46 | KP257462.1 Salvia miltiorrhiza clone 29 basic helix-loop-helix transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008810069.1 | 1e-116 | transcription factor MYC4-like | ||||
TrEMBL | A0A2H3Z8G3 | 1e-115 | A0A2H3Z8G3_PHODC; transcription factor MYC4-like | ||||
STRING | XP_008810069.1 | 1e-116 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP893 | 33 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 7e-38 | bHLH family protein |