PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1051061g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family WRKY
Protein Properties Length: 416aa    MW: 45570.4 Da    PI: 6.375
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1051061g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26240300259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK++ gs+fprsYYrCt++   gC++kk+v+r ++dp + ei+Y g+H ++
  PDK_30s1051061g001 240 DDGYTWRKYGQKDILGSRFPRSYYRCTHKsyyGCEAKKQVQRLDDDPYTYEIKYCGTHSCN 300
                         8***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-25234301IPR003657WRKY domain
SuperFamilySSF1182904.18E-24238301IPR003657WRKY domain
SMARTSM007743.3E-34239301IPR003657WRKY domain
PROSITE profilePS5081121.482240302IPR003657WRKY domain
PfamPF031065.1E-24240299IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MTQSTFIFLF FFLGTTQSSL PHRNVTKSPP PAAMDDTLNQ ILIHACKLAR DLETKLPHIA  60
NHPPLLFSSC EEVAEAFNKA VHELHSRNAP QYNTQMFFGE TSGSLSDMRT ASPLDIRAGE  120
GSSHGGTYTP AINFSQGQPM EEDNPFYRRR TPEDQTITPD LRHLGLEIQG SGGGSTPDTH  180
IEAFRRGGGE APVAADGSSV AERRPTGSSI QRSSRRRRDS GGTIMRVPAL RTGNMEIPPD  240
DGYTWRKYGQ KDILGSRFPR SYYRCTHKSY YGCEAKKQVQ RLDDDPYTYE IKYCGTHSCN  300
TSTTPLLIPS LAPNDNNNTS SNTSNPQGEA PMPEATAQPP SSLPTSTQLG IWFSRELEHG  360
QRDILSLMDS NTQAGPSNVQ GGRDIDSVAA LADVMFNSGS SGSSMDAIFS QPRQDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19240299968OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017697057.10.0WRKY transcription factor 55
TrEMBLA0A2H3ZKV30.0A0A2H3ZKV3_PHODC; WRKY transcription factor 55
STRINGXP_008782780.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97963344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-40WRKY DNA-binding protein 55