PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1048951g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 400aa MW: 43844.1 Da PI: 6.5632

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1048951g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00071	162	180	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dC+ F+r nL+ H+r H PDK_30s1048951g002 162 DCDDGFKRDANLRMHMRGH 180 9****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MKASTGVGLS MPNCFSNYVE SLYWDPRLVL SNLSFLEQKI HQVQDIVRSI SNQEGSLLPS 60 VKNTLVSTNP SVGHLGSIVG AQTSSGINGG QQQNEVMRME VPKASAYDDL IEGFNGDGNE 120 GSELINGLKS HGNEGDELIK CLKSSEGEGT ESVPVEDHDV KDCDDGFKRD ANLRMHMRGH 180 GDEYKTPAAL AKPNKEASSE PALIKRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH 240 CDKSFICSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPI 300 LAVDETKVSG ISDQVRGNEV MNGIVGSMDY NFAGSTLDDV QILNDRGVDD GRGCFSPMNF 360 DACNFGGLDE FPRSAFEVSE SSFSFLPSGS SGFIQRSGEN

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MKASTGVGLS MPNCFSNYVE SLYWDPRLVL SNLSFLEQKI HQVQDIVRSI SNQEGSLLPS  60
VKNTLVSTNP SVGHLGSIVG AQTSSGINGG QQQNEVMRME VPKASAYDDL IEGFNGDGNE  120
GSELINGLKS HGNEGDELIK CLKSSEGEGT ESVPVEDHDV KDCDDGFKRD ANLRMHMRGH  180
GDEYKTPAAL AKPNKEASSE PALIKRYSCP FVGCKRNKEH KKFQPLKTIL CVKNHYKRSH  240
CDKSFICSRC NTKKFSVIAD LKTHEKHCGR DKWLCSCGTT FSRKDKLFGH VALFQGHTPI  300
LAVDETKVSG ISDQVRGNEV MNGIVGSMDY NFAGSTLDDV QILNDRGVDD GRGCFSPMNF  360
DACNFGGLDE FPRSAFEVSE SSFSFLPSGS SGFIQRSGEN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795576.1	0.0	zinc finger protein STOP1 homolog isoform X2
Swissprot	Q943I6	1e-154	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A2H3Y9W9	0.0	A0A2H3Y9W9_PHODC; zinc finger protein STOP1 homolog isoform X2
STRING	XP_008795575.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-122	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]