PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1043311g005
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 282aa    MW: 32692.8 Da    PI: 7.308
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1043311g005genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35251162102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+
  PDK_30s1043311g005  25 FLTKTYQLVDDPCTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGEKH 106
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  PDK_30s1043311g005 107 LLSEIHRRKT 116
                         ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.1E-3815108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.16E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAFLVERCGE MMVSVDSHKP VPAPFLTKTY QLVDDPCTDH IVSWGEDETT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGEKHLLSE IHRRKTPQVP  120
HHYHYNHQNY HQSPPPFHSP DEMTSCWIEP SLPLRSGDAE FLSALSEDNQ RLRRKNSLLL  180
SELTHMKKLY SDIIHFIQDH VAPVPPEQRL VSPRSGRLIE LAPDDQLKSP SGLQNGFTKN  240
RCSVTITEES EYSTVKLFGV SIHGKKRLHS ETASREDSNA SH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-222111626131Heat shock factor protein 1
5d5v_B4e-222111626131Heat shock factor protein 1
5d5v_D4e-222111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794230.10.0heat stress transcription factor B-4b-like
SwissprotQ7XHZ07e-97HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLA0A2H3Y6P80.0A0A2H3Y6P8_PHODC; heat stress transcription factor B-4b-like
STRINGXP_008794230.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.15e-87heat shock transcription factor B4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]