PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1042771g006
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 413aa    MW: 45857 Da    PI: 8.8931
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1042771g006genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13258304455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  PDK_30s1042771g006 258 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 304
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.6E-7156IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.6E-85694IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-19255326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-14257308No hitNo description
PfamPF000102.1E-10258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-19258317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.897344413IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MRKRVLQKLH VLSGGADEEI YALRLDRVTD VEMYFLSSMY FSFPRGAGGP GRALASAGFR  60
TVVLVPFDTG VLELASVKTV PESFEALQMI RAVFSPGGSN PVEMKDENGS FGERLSMAAR  120
AEERPVEIQR NGRNHHHRMA PVPAPVSSGI VNGLNWSHTQ VWAFVPHGNG VREDPRTNQF  180
STPKQQQPQP QSQLRQIDFS GGATSRASGA LVARLGVLES EHSDVEASCK EERPVAMDDR  240
RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAYI  300
TELQKNVKEM EAEREECPES AFMGRKRRAQ CPEIDVQAAH DEVIVRVSCP MDTHPVSKVI  360
QVFKEAQINV VDSKVTASNE AVLHTFVVKS PGSEQLMRDK LIAAISRETT SSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-29252314264Transcription factor MYC2
5gnj_B3e-29252314264Transcription factor MYC2
5gnj_E3e-29252314264Transcription factor MYC2
5gnj_F3e-29252314264Transcription factor MYC2
5gnj_G3e-29252314264Transcription factor MYC2
5gnj_I3e-29252314264Transcription factor MYC2
5gnj_M3e-29252314264Transcription factor MYC2
5gnj_N3e-29252314264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239247RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX2759931e-105JX275993.1 Cocos nucifera microsatellite WCYZ2116 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806486.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-136MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2H3Z0230.0A0A2H3Z023_PHODC; transcription factor bHLH13-like
STRINGXP_008806486.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.14e-76ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]