PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1042271g003

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bZIP

Protein Properties

Length: 470aa MW: 52189.6 Da PI: 6.7946

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1042271g003	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	160	192	5	37
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvke 37 k rr+++NReAAr+sR+RKka++++Le + PDK_30s1042271g003 160 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIK 192 7789***********************986555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.4E-8	151	202	No hit	No description
SMART	SM00338	3.3E-5	156	232	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	158	202	IPR004827	Basic-leucine zipper domain
CDD	cd14708	9.94E-23	160	212	No hit	No description
Pfam	PF00170	3.0E-7	160	196	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.44E-7	160	202	No hit	No description
PROSITE pattern	PS00036	0	163	178	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.0E-31	240	315	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MANHSAGETG LSESGSSSQP LAYGFHGITP AATNFFDQEG AAYFWELEAA LMHGVAGTRS 60 DEDRKPFFTT RPPTLEIFPS WPMRFQQTPK ENSQPAESTD SGSAQNTISQ PDSESPAVSI 120 KASLEQPSKQ QQQQQQGMIA GDAPRTAAAP PNHQPRTQEK TLRRLAQNRE AARKSRLRKK 180 AYVQQLESSR IKLTQIEQDL QRARSQGLFF GGASADGNIS SAAAIFDMEY ARWLDENYKH 240 MTDLRRGLQA HLPEGDLRVM VDECLTHYDE IFRLKGVAAK SDVFHLITGM WTTPAERCFL 300 WMGGFRPSEL LKIIIPQLDP LTEQQLVGIC NLQQSSQQAE EALSQGLEQL HQSLADTVAS 360 GSLCEGTNVG IYMDSMGVAL GKLANLEGFV RQADNLRQQT LHQLHRILTV RQAARCFFAI 420 GEYHSRLRAL SSLWASRRPR ENLITDGSAC PTTADLQIIH QPVHSHFSAF

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MANHSAGETG LSESGSSSQP LAYGFHGITP AATNFFDQEG AAYFWELEAA LMHGVAGTRS  60
DEDRKPFFTT RPPTLEIFPS WPMRFQQTPK ENSQPAESTD SGSAQNTISQ PDSESPAVSI  120
KASLEQPSKQ QQQQQQGMIA GDAPRTAAAP PNHQPRTQEK TLRRLAQNRE AARKSRLRKK  180
AYVQQLESSR IKLTQIEQDL QRARSQGLFF GGASADGNIS SAAAIFDMEY ARWLDENYKH  240
MTDLRRGLQA HLPEGDLRVM VDECLTHYDE IFRLKGVAAK SDVFHLITGM WTTPAERCFL  300
WMGGFRPSEL LKIIIPQLDP LTEQQLVGIC NLQQSSQQAE EALSQGLEQL HQSLADTVAS  360
GSLCEGTNVG IYMDSMGVAL GKLANLEGFV RQADNLRQQT LHQLHRILTV RQAARCFFAI  420
GEYHSRLRAL SSLWASRRPR ENLITDGSAC PTTADLQIIH QPVHSHFSAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_029118361.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q53Q70	1e-175	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A3Q0HWG2	0.0	A0A3Q0HWG2_PHODC; transcription factor TGAL4-like
STRING	XP_008787868.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-143	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]