PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1039581g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

Dof

Protein Properties

Length: 300aa MW: 32592.6 Da PI: 7.3035

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1039581g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127.3	4.7e-40	53	112	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s PDK_30s1039581g002 53 QDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRS 112 7899******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-29	51	111	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.7E-33	54	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.357	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MVTPSMRICM DSSHDWLKGI VHEDGGMGSS SPSGEPISCS RPPVMERRLR PQQDQALKCP 60 RCDSTHTKFC YYNNYSLSQP RYFCKTCRRY WTKGGSLRNV PVGGGCRKNK RSGAKKPSEQ 120 PPHPVSSFQN GTDLHLSFSG VQFPHLDSLT DTPRNLNFME CRYNPMHGFS SAGDLDLMDT 180 KFGAMLGSSR GHIFMGEAGV GLGEASHGFA LGAGFHGVSP LGFSADGNHG ALVEACQRLT 240 LPFEAQEEPN AAEVKPDSRI LSLEWQDQCC ADAGHESGGY SNNLGLWAGM INVHGSSTTI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008795919.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A2H3YAK2	0.0	A0A2H3YAK2_PHODC; dof zinc finger protein DOF5.6-like
STRING	XP_008795919.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	8e-37	Dof family protein