PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1038011g001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | bHLH | ||||||||
Protein Properties | Length: 632aa MW: 68841.4 Da PI: 6.236 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 51.5 | 1.8e-16 | 465 | 511 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq PDK_30s1038011g001 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLEEAIEYLKTLQ 511 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-20 | 459 | 520 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.254 | 461 | 510 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.42E-17 | 464 | 515 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.0E-21 | 465 | 519 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-14 | 465 | 511 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-16 | 467 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MPLSQYHQYA TKDKPEATQS RANNCSADLF TMPDHEFAEL LWENGQIVMQ SHSSRPKKSS 60 LPTTFSSQAA GVREKDGRDA GNPRASQFDA MEPMVNDFSP SGPSADIGID AQDDDMVPWI 120 SFPIEEPLPK DALQNDYCSE FLNEFPGANL NSPSAYNKRT AADGSSGLGQ DIRNSHSAEH 180 EHALKAFAES SEPSRVRTSQ LFQFSQHCQS SAPSSKSRAT DTGIGDSTRT HLQNQNPSSA 240 KPPQLNGGML NFSHFSRPAM LAKANLHGVD GKRTNEKASA PLNINTVEST LIESACVFES 300 ATGSTLIESA SVFESATGVQ GQSVSVPPGM ELQSPVKLPQ EVIPVEHSEA ICQQDASRKN 360 DSNILHNNCS KPADQPASSS VAASAALRRH KTEKAPEVAV ASSSVCSANS AGAASNDPKQ 420 GDKRKSREGE ESGYQSEDFE DVSVDLRKPA TGRGMGAKRS RAAEVHNLSE RRRRDRINEK 480 MRALQELIPN CNKADKASML EEAIEYLKTL QMQVQILSMS SGLCMPPMLL PHDTAPTAIS 540 ADQQQQNIEA LHGSGINDSQ IQTPDQHARE NGHLHHISEN GIAQKVSSEM FRYWLQWTKA 600 YGHCLIEMGI ACKISMKDAT QLKSSTMWKF TF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 469 | 474 | ERRRRD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026665428.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2 | ||||
TrEMBL | A0A3Q0IEJ8 | 0.0 | A0A3Q0IEJ8_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2 | ||||
STRING | XP_008807920.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-39 | phytochrome interacting factor 3 |