PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1037851g002

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

C2H2

Protein Properties

Length: 181aa MW: 19937.8 Da PI: 6.5093

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1037851g002	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H PDK_30s1037851g002 33 YECMFCKRGFTTAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.19E-6	31	60	No hit	No description
Pfam	PF13912	1.1E-5	32	57	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.074	33	60	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.5E-4	33	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MEGGHNKGTK ASSSEASSPE PTTDDAGTMR PYYECMFCKR GFTTAQALGG HMNIHRKDRA 60 RMQHGRMVSS VSGQAEENSE GYGYNIPYSY HHQAYSQVSE SLKNYSLCFP ASSSGGRDSR 120 VSRDDDMGSR RQRELIRFGQ GLQLGLGMHF GGSSAVYEEE KGKDVDGEGE LDLELRLGHQ 180 P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008794311.1	1e-132	transcriptional regulator SUPERMAN-like
TrEMBL	A0A2H3Y6W4	1e-131	A0A2H3Y6W4_PHODC; transcriptional regulator SUPERMAN-like
STRING	XP_008794311.1	1e-132	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6363	32	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	1e-13	C2H2 family protein