PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1037851g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family C2H2
Protein Properties Length: 212aa    MW: 23643.4 Da    PI: 7.8287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1037851g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-054567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C++ F++   L  H+++H
  PDK_30s1037851g001 45 YTCSFCKREFRSAQALGGHMNVH 67
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-64271No hitNo description
PROSITE profilePS5015711.244572IPR007087Zinc finger, C2H2
SMARTSM003550.00384567IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-64568IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MERCGRSSRD NSNKVREPWS YSQVGKGDTL CSGLIGGFSW PPRSYTCSFC KREFRSAQAL  60
GGHMNVHRRD RARLRQSPPW DLPLSNHNPN PNPSGTFIPN LNVSPPSIAS HDTKLSPRTY  120
RFPSLLSPLT HFSSTSSSAS SAELFCSRGG DLKGMETVKT FFGVEEFRDL VEEGTANVVR  180
KERELVRLDL EIGTCGDSEE DVLDLELRLG YT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A6e-144067229superman protein
2l1o_A6e-144067229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794310.11e-155transcriptional regulator SUPERMAN-like
TrEMBLA0A2H3Y6W11e-154A0A2H3Y6W1_PHODC; transcriptional regulator SUPERMAN-like
STRINGXP_008794310.11e-155(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46673065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-27C2H2 family protein