PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1037231g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HB-other

Protein Properties

Length: 1218aa MW: 138086 Da PI: 8.2401

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1037231g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.5	2.6e-14	59	111	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ t+ ql+ Le+l+ ++yp+++++ee A +l+Lt +q+++WF rR kekk PDK_30s1037231g001 59 TKKTQAQLQSLEKLYSDEKYPKQKAMEEYAISLNLTYNQIRTWFVERRRKEKK 111 7789************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-13	43	113	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-15	45	114	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.835	52	112	IPR001356	Homeobox domain
SMART	SM00389	1.8E-12	54	116	IPR001356	Homeobox domain
CDD	cd00086	4.19E-11	59	113	No hit	No description
Pfam	PF00046	1.3E-11	59	111	IPR001356	Homeobox domain
PROSITE profile	PS50827	10.218	427	486	IPR018501	DDT domain
SMART	SM00571	4.8E-6	427	486	IPR018501	DDT domain
Pfam	PF02791	4.8E-6	429	481	IPR018501	DDT domain
Pfam	PF15612	5.8E-8	707	748	IPR028942	WHIM1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1218 aa Download sequence Send to blast
CNDKIASLQS EDHRFTISSY LEFRRRLQMI NFVLALRVPV GSAGLMGNDD NNAKKDNGTK 60 KTQAQLQSLE KLYSDEKYPK QKAMEEYAIS LNLTYNQIRT WFVERRRKEK KENEALSKLK 120 SIESVEPESD QSNDNVFFAD GRHVRQKDKH SAPIMHRANI SEKKHLVRLQ VLFSQDYILK 180 KVFRKDGPPL GVEFDPPPGN AFSYRTGSQR GQNLQSCYNS QRSLKKRKVL EFPLVDPITS 240 HERNVPEKKC GMGKGLMTVW CATNSGSGKF PTGIDFVNGS AAWMLFKSNA SFKKVMCQVS 300 KRMQQRGQRQ NTSWKKIKEK RKLPIRKRKV LCGKNVDQKK PHPTECKLSL DEPKSLEQSN 360 ALTVLVDDEE LELRELQAGP NPLRCSAHLA SSGRHGCPLC KDLLTRFPPQ SVKMKLPFCI 420 RPWDSSPELV KKLFKVLRFL YTHSVTIEVC LFTLDELAQA FHDKDSLLLG KIHVALLKLL 480 LLDVEREITA GFICRAFKDC KFLGFLNFVR EQELDVNFWS RSLNPLTWTE ILRQVLVAAG 540 YGSKQNTAKR QIFSKERNRM AKYGLCPRTL KGELFTLLSE QGTGGLKVSE LARASQIVDL 600 DLPNTKEDLE QLIGSTLSSD ITLFEKIGPS AYRLRVDPHV KGKEDLLSDT EDSGSVDDDS 660 VDASSSNDDS EEINSAIHER WIVKYKARRK KIGQEVAKCT EIDESYSGEA WVLGLMEGEY 720 SDLSIEEKLN ALAALVDLVG AGSIVRPEEP IRAISVIPST QSHGSGAKIK KSSTNNHLPS 780 QASWEGPAHN VEETHSLPVS CPTDFSATFL KTTKKGQSSV HANEYHPSVS RTKNSEPMGE 840 PGQVVHPLQS IYLGSDRRYN SYWLFLGPCA ADDPGHRRVY FESSDDGHWE ALHTLRSVLD 900 GRGTREARLC ASLEKRETFL CQAMDEYMTD EIRIRQTRRS DPSDLDMNSG DGSSPISDID 960 NVTIPTESTE NLLAASGAIV LEMRRGAEDK KQKWERLQAF DKWIWSSFYS SLNAVKYSKR 1020 SYMESLARCE SCHDLYWRDE KHCKICHATF EIDFDLEERY AIHVAICREV EDTSGCPNHK 1080 VLPSQLQALK AAIHAIEMNM PDAALANTWT SSAHKLWVKR LRRTSSMPEL LQVLVDFVGA 1140 INEEWLYECA SSFGSNMALD DIIVYFQTMP QTTSAVALWM VKLDSLIAPY LERVQSKRRL 1200 TSMSQLRRMI TSYYDLDL

Sequence ? help Back to Top

Protein Sequence Length: 1218 aa Download sequence Send to blast

CNDKIASLQS EDHRFTISSY LEFRRRLQMI NFVLALRVPV GSAGLMGNDD NNAKKDNGTK  60
KTQAQLQSLE KLYSDEKYPK QKAMEEYAIS LNLTYNQIRT WFVERRRKEK KENEALSKLK  120
SIESVEPESD QSNDNVFFAD GRHVRQKDKH SAPIMHRANI SEKKHLVRLQ VLFSQDYILK  180
KVFRKDGPPL GVEFDPPPGN AFSYRTGSQR GQNLQSCYNS QRSLKKRKVL EFPLVDPITS  240
HERNVPEKKC GMGKGLMTVW CATNSGSGKF PTGIDFVNGS AAWMLFKSNA SFKKVMCQVS  300
KRMQQRGQRQ NTSWKKIKEK RKLPIRKRKV LCGKNVDQKK PHPTECKLSL DEPKSLEQSN  360
ALTVLVDDEE LELRELQAGP NPLRCSAHLA SSGRHGCPLC KDLLTRFPPQ SVKMKLPFCI  420
RPWDSSPELV KKLFKVLRFL YTHSVTIEVC LFTLDELAQA FHDKDSLLLG KIHVALLKLL  480
LLDVEREITA GFICRAFKDC KFLGFLNFVR EQELDVNFWS RSLNPLTWTE ILRQVLVAAG  540
YGSKQNTAKR QIFSKERNRM AKYGLCPRTL KGELFTLLSE QGTGGLKVSE LARASQIVDL  600
DLPNTKEDLE QLIGSTLSSD ITLFEKIGPS AYRLRVDPHV KGKEDLLSDT EDSGSVDDDS  660
VDASSSNDDS EEINSAIHER WIVKYKARRK KIGQEVAKCT EIDESYSGEA WVLGLMEGEY  720
SDLSIEEKLN ALAALVDLVG AGSIVRPEEP IRAISVIPST QSHGSGAKIK KSSTNNHLPS  780
QASWEGPAHN VEETHSLPVS CPTDFSATFL KTTKKGQSSV HANEYHPSVS RTKNSEPMGE  840
PGQVVHPLQS IYLGSDRRYN SYWLFLGPCA ADDPGHRRVY FESSDDGHWE ALHTLRSVLD  900
GRGTREARLC ASLEKRETFL CQAMDEYMTD EIRIRQTRRS DPSDLDMNSG DGSSPISDID  960
NVTIPTESTE NLLAASGAIV LEMRRGAEDK KQKWERLQAF DKWIWSSFYS SLNAVKYSKR  1020
SYMESLARCE SCHDLYWRDE KHCKICHATF EIDFDLEERY AIHVAICREV EDTSGCPNHK  1080
VLPSQLQALK AAIHAIEMNM PDAALANTWT SSAHKLWVKR LRRTSSMPEL LQVLVDFVGA  1140
INEEWLYECA SSFGSNMALD DIIVYFQTMP QTTSAVALWM VKLDSLIAPY LERVQSKRRL  1200
TSMSQLRRMI TSYYDLDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	109	RRRKEK
2	104	111	RRRKEKKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008813491.1	0.0	homeobox-DDT domain protein RLT3
TrEMBL	A0A2H3ZH97	0.0	A0A2H3ZH97_PHODC; homeobox-DDT domain protein RLT3
STRING	XP_008813491.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator