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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PDK_30s1028591g001 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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| Family |
MYB_related |
| Protein Properties |
Length: 140aa MW: 15290.9 Da PI: 4.8302 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PDK_30s1028591g001 | genome | PDK | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 38.5 | 2.6e-12 | 37 | 79 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g+WT E +ll++av ++G + W++Ia+++ ++ + +c+ r+ +
PDK_30s1028591g001 37 GAWTDAETLLLLEAVLKHGDD-WDLIAQHVR-TKNRLDCIARLIQ 79
89*****************88.*********.999999*999866 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 140 aa
Download sequence Send
to blast |
GGFVVCLKCS KTENEIEGKS ADDNSDRVDG NANHATGAWT DAETLLLLEA VLKHGDDWDL 60
IAQHVRTKNR LDCIARLIQL PFGDHMLGTF SGKYDAKNSG NQATNTKAIQ HASSELLPEP 120
KTDGHVHNDV NEKVEEESIP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}. |
| Publications
? help Back to Top |
- Sarnowski TJ,Swiezewski S,Pawlikowska K,Kaczanowski S,Jerzmanowski A
AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time.
Nucleic Acids Res., 2002. 30(15): p. 3412-21
[PMID:12140326] - Zhou C,Miki B,Wu K
CHB2, a member of the SWI3 gene family, is a global regulator in Arabidopsis.
Plant Mol. Biol., 2003. 52(6): p. 1125-34
[PMID:14682613] - Sarnowski TJ, et al.
SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
Plant Cell, 2005. 17(9): p. 2454-72
[PMID:16055636]
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