PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1028391g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

HSF

Protein Properties

Length: 319aa MW: 35857.7 Da PI: 10.3166

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1028391g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.7	8.7e-34	31	122	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k++e++ed++++e+isw eng+sfvv+ + efa+++Lp Fkh+nf+SFvRQLn+YgF+kv ++ weF++++F++g+++ PDK_30s1028391g001 31 FLTKTHEMVEDRRTDEVISWGENGRSFVVWRPVEFARDLLPVQFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRQGERR 112 9***************************************************************99.........********** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i+r+k PDK_30s1028391g001 113 LLCEIRRRKA 122 *****986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.7E-36	23	115	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.98E-33	27	120	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	3.1E-54	27	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-18	31	54	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.5E-30	31	120	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-18	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	70	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.5E-18	82	94	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MAAPKNGQQN NSSSSSNNGG KDRSPGGPAP FLTKTHEMVE DRRTDEVISW GENGRSFVVW 60 RPVEFARDLL PVQFKHNNFS SFVRQLNTYG FRKVVPDRWE FANENFRQGE RRLLCEIRRR 120 KAAPPQPPLA GKTNAGLGHH PCLASSTSNS GEVHSSSSTS STPPPPTLPP QQLLDLINEN 180 EKIKKDNKIL RRELAKSRQH CRDLFGFLSK FIHVDELDIS LLMREKGLTE ARICRDETTK 240 KKDVEEEVGK KEEGLKLFGV LLKGFEGKER KKSRREKRGR CDGVGEGYGA AERPMKMGFV 300 APWMGLSTPV RQGSSKVCD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d8k_B	1e-20	28	123	3	108	Heat shock factor protein 2
5d8l_B	1e-20	28	123	3	108	Heat shock factor protein 2
5d8l_D	1e-20	28	123	3	108	Heat shock factor protein 2
5d8l_F	1e-20	28	123	3	108	Heat shock factor protein 2
5d8l_H	1e-20	28	123	3	108	Heat shock factor protein 2
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008808108.1	0.0	heat stress transcription factor B-1-like
TrEMBL	A0A2H3Z4L7	0.0	A0A2H3Z4L7_PHODC; heat stress transcription factor B-1-like
STRING	XP_008808108.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-49	heat shock transcription factor B4