PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1027421g001
Organism
Phoenix dactylifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family M-type_MADS
Protein Properties Length: 332aa    MW: 36864.2 Da    PI: 7.9229
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1027421g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.71.1e-16958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        k+ie++++r+ t+ kR  g+ KKA+EL +LCd+ ++ i f+++g++ +++
  PDK_30s1027421g001  9 KFIEEQRKRSATYRKRIGGLKKKASELAILCDIPALAISFGPEGQVETWP 58
                        79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-14159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.404161IPR002100Transcription factor, MADS-box
CDDcd002664.21E-18285No hitNo description
SuperFamilySSF554554.32E-20292IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-141057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGRPKVQLKF IEEQRKRSAT YRKRIGGLKK KASELAILCD IPALAISFGP EGQVETWPED  60
NQAAGYIIQR YRELSTVIQN KHKLDLPGYM KAEINKRRAS CNRRIRDLAD TPLLPTDDLL  120
CAMNKSLREL AHQLDSRMEA IKERIQLLKD RQHFNGGETI NLGGQCLEIV PRDGMMGIQS  180
TSSGYDLMVS DPYLTLNTSL QYPPQPRSFS FLQFPYVPVS MDEVPLATVP SIPMNMDEVP  240
FTVVPPIPTS STSPLVGAIL ENDSANRGVV PVHPLNSSIG LFENHNLMGG GAAEQNHTNI  300
VVAQNNVHHL ADCASPKQTS VSSKPWPFAW NP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783100.10.0agamous-like MADS-box protein AGL14
TrEMBLA0A2H3XFV90.0A0A2H3XFV9_PHODC; agamous-like MADS-box protein AGL14
STRINGXP_008783100.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16694411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.36e-13M-type_MADS family protein