PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PDK_30s1026291g001

Organism

Phoenix dactylifera

Taxonomic ID

42345

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix

Family

bHLH

Protein Properties

Length: 451aa MW: 49220.1 Da PI: 7.151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PDK_30s1026291g001	genome	PDK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.2	0.00017	345	377	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A++YIk L PDK_30s1026291g001 345 GDRVTALQQLVSPF-----GKTDTASVLHEAIDYIKFL 377 55666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.769	328	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-11	338	396	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-5	338	381	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.5E-7	338	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MAEEFQRGIC SSSSWWSTAR TSSFDGPMLS TSVSCSTELT GIGGSVNWAV PADMVEVKSR 60 SSDESPGSVS NSSTTFQDTH KPQASDQLVA DPIMDSTLQI PGFGLSSPSI NWHQPLFTTS 120 GRSETNLHAL LQEGMNSRPN LQQEPAIESN QTHMNVESSS FNLLKDLNQG LMQDKHHYSS 180 SINSYPLFPA SFGLPPTLLQ GLLGPGMKPQ QPFNNQQMDS PMSYQGGLNE SLQSQVAKLP 240 QFNMALPMKQ QLHFANNTPF WNPSATATTE TTSNLYSSTP TQIAPHAFKG KTNCSKLLVK 300 SNSEGVGDSS SNAMKKSGNE PAFKKPRIET PSPLPTFKVR KEKLGDRVTA LQQLVSPFGK 360 TDTASVLHEA IDYIKFLHEQ VGVLSAPYLK NGHQIQHSQN LDKTRDGEGS KLDLKSRGLC 420 LVPLSSTFAV ASETPVDFWT PTFGGTYRWR V

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MAEEFQRGIC SSSSWWSTAR TSSFDGPMLS TSVSCSTELT GIGGSVNWAV PADMVEVKSR  60
SSDESPGSVS NSSTTFQDTH KPQASDQLVA DPIMDSTLQI PGFGLSSPSI NWHQPLFTTS  120
GRSETNLHAL LQEGMNSRPN LQQEPAIESN QTHMNVESSS FNLLKDLNQG LMQDKHHYSS  180
SINSYPLFPA SFGLPPTLLQ GLLGPGMKPQ QPFNNQQMDS PMSYQGGLNE SLQSQVAKLP  240
QFNMALPMKQ QLHFANNTPF WNPSATATTE TTSNLYSSTP TQIAPHAFKG KTNCSKLLVK  300
SNSEGVGDSS SNAMKKSGNE PAFKKPRIET PSPLPTFKVR KEKLGDRVTA LQQLVSPFGK  360
TDTASVLHEA IDYIKFLHEQ VGVLSAPYLK NGHQIQHSQN LDKTRDGEGS KLDLKSRGLC  420
LVPLSSTFAV ASETPVDFWT PTFGGTYRWR V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026666063.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A3Q0IGD5	0.0	A0A3Q0IGD5_PHODC; transcription factor bHLH112-like
STRING	XP_008810246.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-56	bHLH family protein