PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PDK_30s1022981g004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
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Family | ERF | ||||||||
Protein Properties | Length: 453aa MW: 50929.3 Da PI: 6.6469 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.7e-20 | 199 | 249 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa a+++a+k+++g PDK_30s1022981g004 199 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTALEAALAYDEAAKAMYG 249 79*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.18E-29 | 199 | 257 | No hit | No description |
Pfam | PF00847 | 1.5E-14 | 199 | 249 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-20 | 200 | 257 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.575 | 200 | 257 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-30 | 200 | 258 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-34 | 200 | 263 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 201 | 212 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 223 | 239 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MAEPERTFVM RFDMGTCLYF DSKIDFSFPK HSKSCAIEVV INEIILLHMI LGMSADLERL 60 IVQRHADEKS RTNFKNKVVC VKVKESFQDR RRSWNRCAQT IKKNLAFCNQ NQVVVIVSLN 120 QGTSFPTNAE VLVLYARKKR VRRSHNGPNS VAETIARWRE QNSQLECSFN GEKRARRAPA 180 KGSKKGCMKG KGGPDNAHCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF PTALEAALAY 240 DEAAKAMYGP YARLNLPQFN GAANAQATTS GSCESTTTSH HSDVSHDWSP RSPEVKVPKK 300 ELEEEIRNDS LPPAPVGAAA KVEQPGEELF GPRDQLEDLP EDMFDIGDML RMMDADPTNR 360 GVGGEHTDGR TGHSGDVDAD INWQLSSPSA LSFQLQNPDA KLLGSLHHME QNPIAMDYGY 420 DDFVSQLEQD WKYGLPDDDP GMWEMGYPES DLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-16 | 189 | 258 | 3 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804144.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
TrEMBL | A0A2H3YVJ1 | 0.0 | A0A2H3YVJ1_PHODC; dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
STRING | XP_008804144.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11020.1 | 2e-31 | DRE/CRT-binding protein 2B |